HTLV1 Target gene Detail Information

> C2orf50 Gene Search Result

Gene Information

Gene Name	C2orf50
Gene ID	130813
Gene Full Name	chromosome 2 open reading frame 50
Transcripts	ENSG00000150873
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q96LR7
HGNC ID	HGNC:26324
VEGA ID	OTTHUMG00000119057
String ID	9606.ENSP00000370997
PharmGKB ID	PA162379180

Target gene [C2orf50] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6001183	chr2	491	36	23	550	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of C2orf50 expression and immune infiltrating cell level correlation result in HTLV1+ samples
C2orf50 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of C2orf50 expression and immune infiltrating cell level correlation result in HTLV1+ samples
C2orf50 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).