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EBV Target gene Detail Information

> CCDC171 Gene Search Result


Gene Information
Gene Name CCDC171
Gene ID 203238
Gene Full Name coiled-coil domain containing 171
Gene Alias C9orf93; bA536D16.1; bA778P13.1
Transcripts ENSG00000164989
Virus EBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Nucleoli;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q6TFL3
HGNC ID HGNC:29828
VEGA ID OTTHUMG00000019584
String ID 9606.ENSP00000370077
PharmGKB ID PA134921892
Target gene [CCDC171] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000041 chr9 93 286 469 848 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE102203 (GEO) B-cell lymphoma 9 Plasmablastic lymphomas (EBV+)(6), Plasmablastic lymphomas (EBV-)(3)
GSE100458 (GEO) Burkitt lymphoma 14 Burkitt lyphoma cell line Akata(EBV+)(2),Burkitt lyphoma cell line Akata(EBV-)(2),Burkitt lyphoma cell line Awia(EBV+)(2),Burkitt lyphoma cell line Awia(EBV-)(2),Burkitt lyphoma cell line Eli(EBV+)(1),Burkitt lyphoma cell line Eli(EBV-)(1),Burkitt lyphoma cell line Mutu(EBV+)(2),Burkitt lyphoma cell line Mutu(EBV-)(2)
GSE42867 (GEO) Burkitt lymphoma 12 Burkitt lymphoma cell line Awia (EBV+)(12)
GSE85599 (GEO) Infectious mononucleosis 17 Chronic active EBV infection (EBV+)(5), Acute infectious mononucleosis (EBV+)(6), Normal (6)
GSE12452 (GEO) Nasopharyngeal carcinoma 41 Nasopharyngeal carcinoma (EBV+)(31), Normal(10)

> Dataset: GSE102203

HeatMap of cell type fractions in all samples Lollipop of CCDC171 expression and immune infiltrating cell level correlation result in EBV+ samples
CCDC171 expression: Low -> High

> Dataset: GSE100458

HeatMap of cell type fractions in all samples Lollipop of CCDC171 expression and immune infiltrating cell level correlation result in EBV+ samples
CCDC171 expression: Low -> High

> Dataset: GSE42867

HeatMap of cell type fractions in all samples Lollipop of CCDC171 expression and immune infiltrating cell level correlation result in EBV+ samples
CCDC171 expression: Low -> High

> Dataset: GSE85599

HeatMap of cell type fractions in all samples Lollipop of CCDC171 expression and immune infiltrating cell level correlation result in EBV+ samples
CCDC171 expression: Low -> High

> Dataset: GSE12452

HeatMap of cell type fractions in all samples Lollipop of CCDC171 expression and immune infiltrating cell level correlation result in EBV+ samples
CCDC171 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).