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HBV Target gene Detail Information

> CLSTN2 Gene Search Result


Gene Information
Gene Name CLSTN2
Gene ID 64084
Gene Full Name calsyntenin 2
Gene Alias CS2; CSTN2; CDHR13; ALC-GAMMA; alcagamma
Transcripts ENSG00000158258
Virus HBV
Gene Type protein coding
HPA Location Info Vesicles;Cytokinetic bridge;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins
Uniport_ID Q9H4D0
HGNC ID HGNC:17448
VEGA ID OTTHUMG00000160139
OMIM ID 611323
String ID 9606.ENSP00000402460
PharmGKB ID PA38239
Target gene [CLSTN2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006050 chr3 5 34 5 44 View
1007566 chr3 18 4 4 26 View
1014395 chr3 1 2 3 View
1015747 chr3 2 2 View
1015748 chr3 2 2 View
1015749 chr3 2 2 View
1019335 chr3 0 View
1403736 chr3 1 2 3 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of CLSTN2 expression and immune infiltrating cell level correlation result in HBV+ samples
CLSTN2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).