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HBV Target gene Detail Information

> COL18A1 Gene Search Result


Gene Information
Gene Name COL18A1
Gene ID 80781
Gene Full Name collagen type XVIII alpha 1 chain
Gene Alias KS; KNO; KNO1
Transcripts ENSG00000182871
Virus HBV
Gene Type protein coding
HPA Location Info Golgi apparatus;Predicted to be secreted;
HPA Protein Class Info Cancer-related genes, Disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID P39060
HGNC ID HGNC:2195
VEGA ID OTTHUMG00000090407
OMIM ID 120328
String ID 9606.ENSP00000347665
PharmGKB ID PA26711
Target gene [COL18A1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006396 chr21 3 36 39 View
1007644 chr21 25 25 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of COL18A1 expression and immune infiltrating cell level correlation result in HBV+ samples
COL18A1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).