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HTLV1 Target gene Detail Information

> FAM20C Gene Search Result


Gene Information
Gene Name FAM20C
Gene ID 56975
Gene Full Name FAM20C, golgi associated secretory pathway kinase
Gene Alias RNS; DMP4; G-CK; DMP-4; GEF-CK
Transcripts ENSG00000281429
Virus HTLV1
Gene Type protein coding
HPA Location Info Golgi apparatus;Nucleoplasm;Predicted to be secreted;
HPA Protein Class Info Disease related genes, Enzymes, Plasma proteins, Potential drug targets, Predicted secreted proteins
Uniport_ID Q8IXL6
HGNC ID HGNC:22140
VEGA ID OTTHUMG00000190398
OMIM ID 611061
String ID 9606.ENSP00000322323
PharmGKB ID PA134898453
Target gene [FAM20C] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6001014 chr7 612 27 639 View
6022055 chr7 3 2 5 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of FAM20C expression and immune infiltrating cell level correlation result in HTLV1+ samples
FAM20C expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of FAM20C expression and immune infiltrating cell level correlation result in HTLV1+ samples
FAM20C expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of FAM20C expression and immune infiltrating cell level correlation result in HTLV1+ samples
FAM20C expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).