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EBV Target gene Detail Information

> GDPD4 Gene Search Result


Gene Information
Gene Name GDPD4
Gene ID 220032
Gene Full Name glycerophosphodiester phosphodiesterase domain containing 4
Gene Alias GDE6
Transcripts ENSG00000178795
Virus EBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins
Uniport_ID Q6W3E5
HGNC ID HGNC:24849
VEGA ID OTTHUMG00000165136
String ID 9606.ENSP00000320815
PharmGKB ID PA142671742
Target gene [GDPD4] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000553 chr11 12 12 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE102203 (GEO) B-cell lymphoma 9 Plasmablastic lymphomas (EBV+)(6), Plasmablastic lymphomas (EBV-)(3)
GSE135644 (GEO) Gastric carcinoma 10 Gastric adenocarcinoma cell line AGS (5), Gastric adenocarcinoma cell line AGS (EBV+)(5)
GSE45919 (GEO) Infectious mononucleosis 24 Infectious mononucleosis (IM)(EBV+)(3), Normal (9), Latent EBV (12)
GSE85599 (GEO) Infectious mononucleosis 17 Chronic active EBV infection (EBV+)(5), Acute infectious mononucleosis (EBV+)(6), Normal (6)
GSE58240 (GEO) Multiple sclerosis 32 Multiple sclerosis IFN-β treated (EBV+)(16), Multiple sclerosis untreated (EBV+)(16)

> Dataset: GSE102203

HeatMap of cell type fractions in all samples Lollipop of GDPD4 expression and immune infiltrating cell level correlation result in EBV+ samples
GDPD4 expression: Low -> High

> Dataset: GSE135644

HeatMap of cell type fractions in all samples Lollipop of GDPD4 expression and immune infiltrating cell level correlation result in EBV+ samples
GDPD4 expression: Low -> High

> Dataset: GSE45919

HeatMap of cell type fractions in all samples Lollipop of GDPD4 expression and immune infiltrating cell level correlation result in EBV+ samples
GDPD4 expression: Low -> High

> Dataset: GSE85599

HeatMap of cell type fractions in all samples Lollipop of GDPD4 expression and immune infiltrating cell level correlation result in EBV+ samples
GDPD4 expression: Low -> High

> Dataset: GSE58240

HeatMap of cell type fractions in all samples Lollipop of GDPD4 expression and immune infiltrating cell level correlation result in EBV+ samples
GDPD4 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).