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HBV Target gene Detail Information

> HCG27 Gene Search Result


Gene Information
Gene Name HCG27
Gene ID 253018
Gene Alias bCX101P6.9; bPG299F13.9; bQB115I13.2
Transcripts ENSG00000206344
Virus HBV
Gene Type ncRNA
HPA Location Info
HGNC ID HGNC:27366
VEGA ID OTTHUMG00000004833
String ID 9606.ENSP00000453364
lncRNASNP2 ID NONHSAG043461.2
PharmGKB ID PA134918966
Target gene [HCG27] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1000412 chr6 956 960 514 2430 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of HCG27 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
HCG27 expression: Low -> High
Lollipop of HCG27 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of HCG27 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of HCG27 expression and immune infiltrating cell level correlation result in HBV+ samples
HCG27 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).