Home
Virus
Gene
Disease
Dataset
Download
Help
 
HBV Target gene Detail Information

> HDAC5 Gene Search Result


Gene Information
Gene Name HDAC5
Gene ID 10014
Gene Full Name histone deacetylase 5
Gene Alias HD5; NY-CO-9
Transcripts ENSG00000108840
Virus HBV
Gene Type protein coding
HPA Location Info Nuclear speckles;Cytosol;Golgi apparatus;
HPA Protein Class Info Cancer-related genes, Enzymes, FDA approved drug targets, Predicted intracellular proteins
Uniport_ID Q9UQL6
HGNC ID HGNC:14068
VEGA ID OTTHUMG00000181806
OMIM ID 605315
String ID 9606.ENSP00000225983
Drugbank ID BE0003524; BE0008667
Drug (Cytoscape Annotation) Vorinostat;Romidepsin;Panobinostat;Belinostat
PharmGKB ID PA29230
Target gene [HDAC5] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006767 chr17 34 34 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of HDAC5 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
HDAC5 expression: Low -> High
Lollipop of HDAC5 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of HDAC5 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of HDAC5 expression and immune infiltrating cell level correlation result in HBV+ samples
HDAC5 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).