HIV Target gene Detail Information

> HMCN1 Gene Search Result

Gene Information

Gene Name	HMCN1
Gene ID	83872
Gene Full Name	hemicentin 1
Gene Alias	ARMD1; FBLN6; FIBL6; FIBL-6
Transcripts	ENSG00000143341
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Golgi apparatus;Predicted to be secreted;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID	Q96RW7
HGNC ID	HGNC:19194
VEGA ID	OTTHUMG00000059337
OMIM ID	608548
String ID	9606.ENSP00000271588
PharmGKB ID	PA142671679

Target gene [HMCN1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001585	chr1	24	35	90	149	View
4015576	chr1			1	1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of HMCN1 expression and immune infiltrating cell level correlation result in HIV+ samples
HMCN1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).