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HPV Target gene Detail Information

> IFT43 Gene Search Result


Gene Information
Gene Name IFT43
Gene ID 112752
Gene Full Name intraflagellar transport 43
Gene Alias CED3; RP81; SRTD18; C14orf179
Transcripts ENSG00000119650
Virus HPV
Gene Type protein coding
HPA Location Info Microtubules;Centriolar satellite;
HPA Protein Class Info Disease related genes, Predicted intracellular proteins
Uniport_ID Q96FT9
HGNC ID HGNC:29669
OMIM ID 614068
String ID 9606.ENSP00000238628
PharmGKB ID PA145149677
Target gene [IFT43] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002781 chr14 4 4 8 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE40774 (GEO) Head and neck squamous cell carcinoma 134 Head and neck Squamous cell carcinomas GLOTTIC LARYNX (EBV-)(2), Head and neck Squamous cell carcinomas HYPOPHARYNX (EBV-)(9), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV-)(23), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV+)(2), Head and neck Squamous cell carcinomas OROPHARYNX (EBV-)(22), Head and neck Squamous cell carcinomas OROPHARYNX (EBV+)(54), Head and neck Squamous cell carcinomas OTHER (EBV+)(1), Head and neck Squamous cell carcinomas SUBGLOTTIC LARYNX (EBV-)(1), Head and neck Squamous cell carcinomas SUPRAGLOTTIC (EBV-)(19), Squamous cell carcinomas SUPRAGLOTTIC (EBV+)(1)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of IFT43 expression and immune infiltrating cell level correlation result in HPV+ samples
IFT43 expression: Low -> High

> Dataset: GSE40774

HeatMap of cell type fractions in all samples Lollipop of IFT43 expression and immune infiltrating cell level correlation result in HPV+ samples
IFT43 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of IFT43 expression and immune infiltrating cell level correlation result in HPV+ samples
IFT43 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of IFT43 expression and immune infiltrating cell level correlation result in HPV+ samples
IFT43 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of IFT43 expression and immune infiltrating cell level correlation result in HPV+ samples
IFT43 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).