HIV Target gene Detail Information

> LOC728485 Gene Search Result

Gene Information

Gene Name	LOC728485
Gene ID	728485
Gene Full Name	uncharacterized LOC728485
Transcripts	ENSG00000267260
Virus	HIV
Gene Type	ncRNA
HPA Location Info

Target gene [LOC728485] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002889	chr19	68	8		76	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of LOC728485 expression and immune infiltrating cell level correlation result in HIV+ samples
LOC728485 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of LOC728485 expression and immune infiltrating cell level correlation result in HIV+ samples
LOC728485 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).