HPV Target gene Detail Information

> LOC728877 Gene Search Result

Gene Information

Gene Name	LOC728877
Gene ID	728877
Gene Full Name	COBW domain containing 3 pseudogene
Transcripts	ENSG00000204790
Virus	HPV
Gene Type	pseudo
HPA Location Info

Target gene [LOC728877] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5004376	chr9				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE65858 (GEO)	Head and neck squamous cell carcinoma	270	Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE51993 (GEO)	Cervical intraepithelial neoplasia	24	Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)

> Dataset: GSE65858
HeatMap of cell type fractions in all samples	Lollipop of LOC728877 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC728877 expression: Low -> High

> Dataset: GSE51993
HeatMap of cell type fractions in all samples	Lollipop of LOC728877 expression and immune infiltrating cell level correlation result in HPV+ samples
LOC728877 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).