HIV Target gene Detail Information

> NDC1 Gene Search Result

Gene Information

Gene Name	NDC1
Gene ID	55706
Gene Full Name	NDC1 transmembrane nucleoporin
Gene Alias	NET3; TMEM48
Transcripts	ENSG00000058804
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear membrane;Actin filaments;Plasma membrane;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted membrane proteins, Transporters
Uniport_ID	Q9BTX1
HGNC ID	HGNC:25525
VEGA ID	OTTHUMG00000008073
OMIM ID	610115
String ID	9606.ENSP00000360483
PharmGKB ID	PA142670764

Target gene [NDC1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000179	chr1	664	101	46	811	View
4003124	chr1	67	2		69	View
4015633	chr17	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of NDC1 expression and immune infiltrating cell level correlation result in HIV+ samples
NDC1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).