Home
Virus
Gene
Disease
Dataset
Download
Help
 
EBV Target gene Detail Information

> RBM42 Gene Search Result


Gene Information
Gene Name RBM42
Gene ID 79171
Gene Full Name RNA binding motif protein 42
Transcripts ENSG00000126254
Virus EBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Cytosol;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q9BTD8
HGNC ID HGNC:28117
VEGA ID OTTHUMG00000182063
OMIM ID 613232
String ID 9606.ENSP00000262633
PharmGKB ID PA162400760
Target gene [RBM42] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3300174 chr19 9 2 11 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE102203 (GEO) B-cell lymphoma 9 Plasmablastic lymphomas (EBV+)(6), Plasmablastic lymphomas (EBV-)(3)
GSE100458 (GEO) Burkitt lymphoma 14 Burkitt lyphoma cell line Akata(EBV+)(2),Burkitt lyphoma cell line Akata(EBV-)(2),Burkitt lyphoma cell line Awia(EBV+)(2),Burkitt lyphoma cell line Awia(EBV-)(2),Burkitt lyphoma cell line Eli(EBV+)(1),Burkitt lyphoma cell line Eli(EBV-)(1),Burkitt lyphoma cell line Mutu(EBV+)(2),Burkitt lyphoma cell line Mutu(EBV-)(2)
GSE42867 (GEO) Burkitt lymphoma 12 Burkitt lymphoma cell line Awia (EBV+)(12)
GSE45919 (GEO) Infectious mononucleosis 24 Infectious mononucleosis (IM)(EBV+)(3), Normal (9), Latent EBV (12)
GSE85599 (GEO) Infectious mononucleosis 17 Chronic active EBV infection (EBV+)(5), Acute infectious mononucleosis (EBV+)(6), Normal (6)
GSE58240 (GEO) Multiple sclerosis 32 Multiple sclerosis IFN-β treated (EBV+)(16), Multiple sclerosis untreated (EBV+)(16)
GSE12452 (GEO) Nasopharyngeal carcinoma 41 Nasopharyngeal carcinoma (EBV+)(31), Normal(10)

> Dataset: GSE102203

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High

> Dataset: GSE100458

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High

> Dataset: GSE42867

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High

> Dataset: GSE45919

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High

> Dataset: GSE85599

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High

> Dataset: GSE58240

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High

> Dataset: GSE12452

HeatMap of cell type fractions in all samples Lollipop of RBM42 expression and immune infiltrating cell level correlation result in EBV+ samples
RBM42 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).