HPV Target gene Detail Information

> RGPD3 Gene Search Result

Gene Information

Gene Name	RGPD3
Gene ID	653489
Gene Full Name	RANBP2-like and GRIP domain containing 3
Gene Alias	RGP3
Transcripts	ENSG00000153165
Virus	HPV
Gene Type	protein coding
HPA Location Info	Nuclear membrane;Vesicles;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	A6NKT7
HGNC ID	HGNC:32416
VEGA ID	OTTHUMG00000153182
OMIM ID	612706
String ID	9606.ENSP00000386588
PharmGKB ID	PA142671072

Target gene [RGPD3] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5402757	chr2	13	1		14	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE65858 (GEO)	Head and neck squamous cell carcinoma	270	Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE51993 (GEO)	Cervical intraepithelial neoplasia	24	Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE65858
HeatMap of cell type fractions in all samples	Lollipop of RGPD3 expression and immune infiltrating cell level correlation result in HPV+ samples
RGPD3 expression: Low -> High

> Dataset: GSE51993
HeatMap of cell type fractions in all samples	Lollipop of RGPD3 expression and immune infiltrating cell level correlation result in HPV+ samples
RGPD3 expression: Low -> High

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of RGPD3 expression and immune infiltrating cell level correlation result in HPV+ samples
RGPD3 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).