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HTLV1 Target gene Detail Information

> SCARA5 Gene Search Result


Gene Information
Gene Name SCARA5
Gene ID 286133
Gene Full Name scavenger receptor class A member 5
Gene Alias Tesr; NET33
Transcripts ENSG00000168079
Virus HTLV1
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q6ZMJ2
HGNC ID HGNC:28701
VEGA ID OTTHUMG00000132172
OMIM ID 611306
String ID 9606.ENSP00000346990
PharmGKB ID PA142670948
Target gene [SCARA5] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6008056 chr8 31 17 48 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of SCARA5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SCARA5 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of SCARA5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SCARA5 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of SCARA5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SCARA5 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).