HTLV1 Target gene Detail Information

> SCG5 Gene Search Result

Gene Information

Gene Name	SCG5
Gene ID	6447
Gene Full Name	secretogranin V
Gene Alias	7B2; SgV; P7B2; SGNE1
Transcripts	ENSG00000277614
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted secreted proteins
Uniport_ID	P05408
HGNC ID	HGNC:10816
VEGA ID	OTTHUMG00000159447
OMIM ID	173120
String ID	9606.ENSP00000300175
PharmGKB ID	PA35724

Target gene [SCG5] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6004083	chr15	12	102	15	129	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of SCG5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SCG5 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of SCG5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SCG5 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of SCG5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SCG5 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).