HTLV1 Target gene Detail Information

> SLC38A6 Gene Search Result

Gene Information

Gene Name	SLC38A6
Gene ID	145389
Gene Full Name	solute carrier family 38 member 6
Gene Alias	NAT-1; SNAT6
Transcripts	ENSG00000139974
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Cell Junctions;Microtubules;Plasma membrane;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID	Q8IZM9
HGNC ID	HGNC:19863
VEGA ID	OTTHUMG00000140335
OMIM ID	616518
String ID	9606.ENSP00000346959
PharmGKB ID	PA134932150

Target gene [SLC38A6] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6010338	chr14	10	15	6	31	View
6013324	chr14	19			19	View
6029430	chr14		1		1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of SLC38A6 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SLC38A6 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of SLC38A6 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SLC38A6 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of SLC38A6 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SLC38A6 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).