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HTLV1 Target gene Detail Information

> SMARCA5 Gene Search Result


Gene Information
Gene Name SMARCA5
Gene ID 8467
Gene Full Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Gene Alias ISWI; SNF2H; hISWI; hSNF2H; WCRF135
Transcripts ENSG00000153147
Virus HTLV1
Gene Type protein coding
HPA Location Info Nucleoplasm;Nucleoli fibrillar center;
HPA Protein Class Info Predicted intracellular proteins, Transcription factors
Uniport_ID O60264
HGNC ID HGNC:11101
VEGA ID OTTHUMG00000161474
OMIM ID 603375
String ID 9606.ENSP00000283131
Drugbank ID BE0004581
PharmGKB ID PA35951
Target gene [SMARCA5] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6026807 chr4 2 2 View
6100266 chr4 0 View
6100267 chr4 1 9 10 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of SMARCA5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SMARCA5 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of SMARCA5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SMARCA5 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of SMARCA5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
SMARCA5 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).