HIV Target gene Detail Information

> SNRNP48 Gene Search Result

Gene Information

Gene Name	SNRNP48
Gene ID	154007
Gene Full Name	small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Alias	C6orf151; dJ512B11.2; dJ336K20B.1
Transcripts	ENSG00000168566
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Cytosol;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q6IEG0
HGNC ID	HGNC:21368
VEGA ID	OTTHUMG00000014213
String ID	9606.ENSP00000339834
PharmGKB ID	PA164726157

Target gene [SNRNP48] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008975	chr6	11	2		13	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SNRNP48 expression and immune infiltrating cell level correlation result in HIV+ samples
SNRNP48 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).