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HBV Target gene Detail Information

> SRRM2 Gene Search Result


Gene Information
Gene Name SRRM2
Gene ID 23524
Gene Full Name serine/arginine repetitive matrix 2
Gene Alias CWF21; Cwc21; 300-KD; SRL300; SRm300; HSPC075
Transcripts ENSG00000167978
Virus HBV
Gene Type protein coding
HPA Location Info Nuclear speckles;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9UQ35
HGNC ID HGNC:16639
VEGA ID OTTHUMG00000177358
OMIM ID 606032
String ID 9606.ENSP00000301740
PharmGKB ID PA38178
Target gene [SRRM2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002403 chr16 44 199 37 280 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of SRRM2 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
SRRM2 expression: Low -> High
Lollipop of SRRM2 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of SRRM2 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SRRM2 expression and immune infiltrating cell level correlation result in HBV+ samples
SRRM2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).