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EBV Target gene Detail Information

> TRAPPC13 Gene Search Result


Gene Information
Gene Name TRAPPC13
Gene ID 80006
Gene Full Name trafficking protein particle complex 13
Gene Alias SHLD3; C5orf44
Transcripts ENSG00000113597
Virus EBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Plasma membrane;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID A5PLN9
HGNC ID HGNC:25828
VEGA ID OTTHUMG00000163649
String ID 9606.ENSP00000409231
PharmGKB ID PA162380280
Target gene [TRAPPC13] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000665 chr5 5 1 1 7 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE102203 (GEO) B-cell lymphoma 9 Plasmablastic lymphomas (EBV+)(6), Plasmablastic lymphomas (EBV-)(3)
GSE100458 (GEO) Burkitt lymphoma 14 Burkitt lyphoma cell line Akata(EBV+)(2),Burkitt lyphoma cell line Akata(EBV-)(2),Burkitt lyphoma cell line Awia(EBV+)(2),Burkitt lyphoma cell line Awia(EBV-)(2),Burkitt lyphoma cell line Eli(EBV+)(1),Burkitt lyphoma cell line Eli(EBV-)(1),Burkitt lyphoma cell line Mutu(EBV+)(2),Burkitt lyphoma cell line Mutu(EBV-)(2)
GSE42867 (GEO) Burkitt lymphoma 12 Burkitt lymphoma cell line Awia (EBV+)(12)
GSE85599 (GEO) Infectious mononucleosis 17 Chronic active EBV infection (EBV+)(5), Acute infectious mononucleosis (EBV+)(6), Normal (6)
GSE12452 (GEO) Nasopharyngeal carcinoma 41 Nasopharyngeal carcinoma (EBV+)(31), Normal(10)

> Dataset: GSE102203

HeatMap of cell type fractions in all samples Lollipop of TRAPPC13 expression and immune infiltrating cell level correlation result in EBV+ samples
TRAPPC13 expression: Low -> High

> Dataset: GSE100458

HeatMap of cell type fractions in all samples Lollipop of TRAPPC13 expression and immune infiltrating cell level correlation result in EBV+ samples
TRAPPC13 expression: Low -> High

> Dataset: GSE42867

HeatMap of cell type fractions in all samples Lollipop of TRAPPC13 expression and immune infiltrating cell level correlation result in EBV+ samples
TRAPPC13 expression: Low -> High

> Dataset: GSE85599

HeatMap of cell type fractions in all samples Lollipop of TRAPPC13 expression and immune infiltrating cell level correlation result in EBV+ samples
TRAPPC13 expression: Low -> High

> Dataset: GSE12452

HeatMap of cell type fractions in all samples Lollipop of TRAPPC13 expression and immune infiltrating cell level correlation result in EBV+ samples
TRAPPC13 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).