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HPV Target gene Detail Information

> UCA1 Gene Search Result


Gene Information
Gene Name UCA1
Gene ID 652995
Gene Alias CUDR; UCAT1; LINC00178; NCRNA00178; onco-lncRNA-36
Transcripts ENSG00000214049
Virus HPV
Gene Type ncRNA
HPA Location Info
Gene Function Oncogene
HGNC ID HGNC:37126
VEGA ID OTTHUMG00000182287
OMIM ID 617500
Rfam ID RF02202
lncRNASNP2 ID NONHSAG025011.2
PharmGKB ID PA165394504
Target gene [UCA1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5200280 chr19 141 6 147 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of UCA1 expression and immune infiltrating cell level correlation result in HPV+ samples
UCA1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).