
SUMMARISING RUN PARAMETERS
==========================
Input filename: /home/hhl//ebv_feature/Feature-extraction-of-virus-sequences-main//data/fastqraw//Sample_B_1.fastq
Trimming mode: paired-end
Trim Galore version: 0.6.10
Cutadapt version: 2.8
Python version: 3.8.10
Number of cores used for trimming: 2
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Unable to auto-detect most prominent adapter from the first specified file (count Nextera: 0, count Illumina: 0, count smallRNA: 0)
Defaulting to Illumina universal adapter ( AGATCGGAAGAGC ). Specify -a SEQUENCE to avoid this behavior).
Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 3 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
Output file will be GZIP compressed


This is cutadapt 2.8 with Python 3.8.10
Command line parameters: -j 2 -e 0.1 -q 20 -O 3 -a AGATCGGAAGAGC /home/hhl//ebv_feature/Feature-extraction-of-virus-sequences-main//data/fastqraw//Sample_B_1.fastq
Processing reads on 2 cores in single-end mode ...
Finished in 0.01 s (24 us/read; 2.54 M reads/minute).

=== Summary ===

Total reads processed:                     500
Reads with adapters:                         6 (1.2%)
Reads written (passing filters):           500 (100.0%)

Total basepairs processed:        62,026 bp
Quality-trimmed:                      76 bp (0.1%)
Total written (filtered):         61,932 bp (99.8%)

=== Adapter 1 ===

Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 6 times; Reverse-complemented: 0 times

No. of allowed errors:
0-9 bp: 0; 10-13 bp: 1

Bases preceding removed adapters:
  A: 0.0%
  C: 66.7%
  G: 0.0%
  T: 33.3%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
3	6	7.8	0	6

RUN STATISTICS FOR INPUT FILE: /home/hhl//ebv_feature/Feature-extraction-of-virus-sequences-main//data/fastqraw//Sample_B_1.fastq
=============================================
500 sequences processed in total

