
SUMMARISING RUN PARAMETERS
==========================
Input filename: /home/hhl//ebv_feature/Feature-extraction-of-virus-sequences-main//data/fastqraw//A0003.fastq
Trimming mode: single-end
Trim Galore version: 0.6.10
Cutadapt version: 2.8
Python version: 3.8.10
Number of cores used for trimming: 2
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Using Illumina adapter for trimming (count: 3). Second best hit was Nextera (count: 0)
Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 3 bp
Minimum required sequence length before a sequence gets removed: 20 bp
Output file will be GZIP compressed


This is cutadapt 2.8 with Python 3.8.10
Command line parameters: -j 2 -e 0.1 -q 20 -O 3 -a AGATCGGAAGAGC /home/hhl//ebv_feature/Feature-extraction-of-virus-sequences-main//data/fastqraw//A0003.fastq
Processing reads on 2 cores in single-end mode ...
Finished in 0.01 s (52 us/read; 1.16 M reads/minute).

=== Summary ===

Total reads processed:                     250
Reads with adapters:                         6 (2.4%)
Reads written (passing filters):           250 (100.0%)

Total basepairs processed:        92,020 bp
Quality-trimmed:                       1 bp (0.0%)
Total written (filtered):         91,784 bp (99.7%)

=== Adapter 1 ===

Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 6 times; Reverse-complemented: 0 times

No. of allowed errors:
0-9 bp: 0; 10-13 bp: 1

Bases preceding removed adapters:
  A: 100.0%
  C: 0.0%
  G: 0.0%
  T: 0.0%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
36	3	0.0	1	3
37	1	0.0	1	0 1
43	1	0.0	1	0 1
47	1	0.0	1	0 1

RUN STATISTICS FOR INPUT FILE: /home/hhl//ebv_feature/Feature-extraction-of-virus-sequences-main//data/fastqraw//A0003.fastq
=============================================
250 sequences processed in total
Sequences removed because they became shorter than the length cutoff of 20 bp:	6 (2.4%)

