Detail information
ID ENOM00051
Accession GSE138365
Status Public on Nov 01, 2019
Title Gene expression from tuft cells under scopolamine treatment
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary
In our study, we investigated the effect of muscarinic receptor blockade on murine intestinal stem cell activity and differentiation. Following pharmacologic (scopolamine) and genetic muscarinic receptor interruption (M3R-KO, M1R-KO; Vil-Cre x M3R fl/fl, Vil-Cre x M1R fl/fl mice, respectively), we observe a selective, significant expansion of DCLK1-positive tuft cells. This is primarily sensed by endocrine Prox1-positive cells (Prox1-CreERT2 x M3R fl/fl mice), while Lgr5-positive ISCs respond with a reduction of their cellular activity (Lgr5-EGFP-IRES-CreERT2 x M3R fl/fl mice). To characterize expanding tuft cells in more detail, adult BAC transgenic DCLK1-DTR-ZSgreen reporter mice generated in our lab were treated with scopolamine or sodium chloride as controls (Sham) for 7d and live jejunal EPC-positive/ZSgreen-positive cells sorted. Extracted total RNA from sorted ZSgreen-positive cells of scopolamine- and sham-treated mice was sequenced. Further analysis revealed that expanding tuft cells orchestrate an increase in mucosal acetylcholine, which maintained intracellular signaling pathways such as p-ERK/ERK 1/2 or TCF-1/7. Finally, acute irradiation injury was employed to investigate the importance of this regulatory circuit for tissue homeostasis. Indeed, tissue injury in Vil-Cre x M3R fl/fl mice resulted in a severe reduction of epithelial DCLK1-positive tuft cells, concomitant to reduced mucosal Ach levels as well as intracellular PI3K-/p-ERK levels. Therefore, DCLK1-positive tuft cells appear essential for the maintenance of a regular intestinal cholinergic niche.
Samples
GSM ID Sample info Characteristics Description
GSM4106036 WH001 treatment: scopolamine ncell_sorted: 3000 mouse_id: M-8463
GSM4106037 WH002 treatment: scopolamine ncell_sorted: 4000 mouse_id: M-8466
GSM4106038 WH003 treatment: scopolamine ncell_sorted: 4000 mouse_id: M-8468
GSM4106039 WH004 treatment: scopolamine ncell_sorted: 4000 mouse_id: N-0593
GSM4106040 WH005 treatment: sham ncell_sorted: 3000 mouse_id: M-8465
GSM4106041 WH006 treatment: sham ncell_sorted: 4000 mouse_id: N-0556
GSM4106042 WH007 treatment: sham ncell_sorted: 4000 mouse_id: N-0564
GSM4106043 WH008 treatment: sham ncell_sorted: 4000 mouse_id: N-0595
Platform GPL24247: Illumina NovaSeq 6000 (Mus musculus)
Indicator
Chrm3, M3R, Trpm5, Pou2f3, Dclk1, Nkx6-3, Qpct, Abca2, Lmx1a, Nr4a1, Arc, Prss12
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