Detail information
ID ENOM00054
Accession GSE202173
Status Public on May 17, 2023
Title Gene expression profile at single cell level of splenic antigen specific memory B-cells after immunization with the Fentanyl-VAST vaccine platform
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary
Antigen specific memory B cells are considered as a homogeneous population. Here, we wanted to isolate antigen-specific memory cells from mice in order to both characterize the response to the immunization regimine and identify high-affinity candidate BCRs for expression. For this, we used single cell RNA sequencing (scRNA-seq) to describe the diversity of anti-fentanyl B cells elicited by a fentanyl-immunization platform and identify the different markers for each subbpopulation. We use this appoach to select the switched memory B cell, study their BCR repertoir and identify the BCR sequences from the most potent memory B cells.
Samples
GSM ID Sample info Characteristics Description
GSM6102635 mouse 1 cell type: B cells tissue: spleen strain: C57BL/6J age: 24-26 weeks Smartseq2
GSM6102636 mouse 6 cell type: B cells tissue: spleen strain: C57BL/6J age: 24-26 weeks Smartseq2
Platform GPL19057: Illumina NextSeq 500 (Mus musculus)
Indicator
FenAb136, FenAb208, Fcer2a, Cd23, Mzb1, Cd9, Cd38, Ccr4, Fos, Cd40, Irf4, Irf8, Blimp1, Bach2, Bcl6, CDR3
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