Detail information
ID ENOM00115
Accession GSE233279
Status Public on Nov 28, 2023
Title Single nuclei transcriptomics of human and monkey striatum implicates DNA damage, neuroinflammation, and neurodegeneration signaling in opioid use disorder
Organism Macaca mulatta; Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary
The striatum in the brain is involved in various behavioral functions, including reward, and disease processes, such as opioid use disorder (OUD). Further understanding of the role of striatal subregions in reward behaviors and their potential associations with OUD requires molecular identification of specific striatal cell types in human brain. The human striatum contains subregions based on different anatomical, functional, and physiological properties, with the dorsal striatum further divided into caudate and putamen. Both caudate and putamen are associated with alterations in reward processing, formation of habits, and development of negative affect states in OUD. Using single nuclei RNA-sequencing of human postmortem caudate and putamen, we identified canonical neuronal cell types in striatum (e.g., dopamine receptor 1 or 2 expressing neurons, D1 or D2) and less abundant subpopulations, including D1/D2 hybrid neurons and multiple classes of interneurons. By comparing unaffected subjects to subjects with OUD, we found neuronal-specific differences in pathways related to neurodegeneration, interferon response, and DNA damage. DNA damage markers were also elevated in striatal neurons of rhesus macaques following chronic opioid administration. We identified sex-dependent differences in the expression of stress-induced transcripts (e.g., FKBP5) among astrocytes and oligodendrocytes from female subjects with OUD. Thus, we describe striatal cell types and leverage these data to gain insights into molecular alterations in human striatum associated with opioid addiction.
Samples
GSM ID Sample info Characteristics Description
GSM7040221 C-1366 tissue: Caudate cell type: striatal cells pair: 1 subject: 1366 Sex: F race: W age: 35 bmi: 35.2 pmi: 11 ph: 6.1 rin: 7.1 tissue.storage.time.mo: 149 dx oud: OUD dx substances: Poly-SUD dx comorbid: Pain Disorder dur.oud: 8 dsm.iv.sud: Opioid Dependence; Sedative or Hypnotic or Anxiolytic Dependence dsm.iv.psych: Pain Disorder Associated with Both Psychological Factors and a General Medical Condition blood.toxicology: Methadone, Tramadol, Alprazolam, Diphenhydramine infxn.dx: Asthma; Recurrent Bronchitis medications.atodc: B, O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040222 C-13281 tissue: Caudate cell type: striatal cells pair: 6 subject: 13281 Sex: F race: W age: 54 bmi: 17.8 pmi: 12.5 ph: 6.9 rin: 8.8 tissue.storage.time.mo: 24.1 dx oud: OUD dx substances: Poly-SUD dx comorbid: None dur.oud: 5 dsm.iv.sud: Opioid Dependence; Sedative or Hypnotic or Anxiolytic Dependence dsm.iv.psych: None blood.toxicology: Fentanyl, Meprobamate medications.atodc: B, C, D, L, O, P tobacco.atod: Y manner.of.death: Accidental cause.of.death: Fentanyl Overdose
GSM7040223 C-1252 tissue: Caudate cell type: striatal cells pair: 4 subject: 1252 Sex: M race: W age: 40 bmi: 25.9 pmi: 21.1 ph: 6.5 rin: 7.6 tissue.storage.time.mo: 167.5 dx oud: OUD dx substances: Poly-SUD dx comorbid: MDD dur.oud: 13 dsm.iv.sud: Opioid Dependence; Alcohol Dependence; Cocaine Dependence; Polysubstance Dependence dsm.iv.psych: Major Depressive Disorder, Single Episode, Severe without Psychotic Features blood.toxicology: Morphine, Phenobarbital, Cocaine Metabolites infxn.dx: Arthritis medications.atodc: O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040224 C-1670 tissue: Caudate cell type: striatal cells pair: 12 subject: 1670 Sex: M race: W age: 42 bmi: 36.2 pmi: 18.5 ph: 6.5 rin: 8.1 tissue.storage.time.mo: 95.2 dx oud: OUD dx substances: OUD-only dx comorbid: None dur.oud: 17 dsm.iv.sud: Opioid Dependence dsm.iv.psych: None blood.toxicology: Morphine, Oxycodone infxn.dx: Osteomyelitis with Non-healing Ulcer; Recurring Foot Infections medications.atodc: O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040225 C-1262 tissue: Caudate cell type: striatal cells pair: 14 subject: 1262 Sex: M race: W age: 41 bmi: 29.9 pmi: 16.3 ph: 6.7 rin: 7.2 tissue.storage.time.mo: 168 dx oud: OUD dx substances: Poly-SUD dx comorbid: None dur.oud: 4 dsm.iv.sud: Opioid Dependence; Cocaine Dependence; Sedative or Hypnotic or Anxiolytic Dependence dsm.iv.psych: None blood.toxicology: Fentanyl, Norfentanyl, Lidocaine, Butalbital, Cocaine Metabolites, Trazodone, Alprazolam, Citalopram, Acetaminophen medications.atodc: B, D tobacco.atod: N manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040226 C-13114 tissue: Caudate cell type: striatal cells pair: 3 subject: 13114 Sex: F race: B age: 54 bmi: 27.6 pmi: 13.7 ph: 6.3 rin: 8.7 tissue.storage.time.mo: 46.8 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected infxn.dx: Arthritis medications.atodc: O tobacco.atod: Y manner.of.death: Natural cause.of.death: Cardiovascular Disease
GSM7040227 C-13151 tissue: Caudate cell type: striatal cells pair: 6 subject: 13151 Sex: F race: W age: 55 bmi: 44.9 pmi: 13.4 ph: 6.2 rin: 7 tissue.storage.time.mo: 41.7 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected infxn.dx: Degenerative Joint Disease medications.atodc: O tobacco.atod: N manner.of.death: Natural cause.of.death: Cardiovascular Disease
GSM7040228 C-612 tissue: Caudate cell type: striatal cells pair: 20 subject: 612 Sex: M race: W age: 60 bmi: 37.5 pmi: 9.6 ph: 6.8 rin: 9 tissue.storage.time.mo: 270.2 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected medications.atodc: N tobacco.atod: U manner.of.death: Accidental cause.of.death: Aspiration
GSM7040229 C-13291 tissue: Caudate cell type: striatal cells pair: 2 subject: 13291 Sex: M race: B age: 37 bmi: 36.3 pmi: 18 ph: 6.9 rin: 7.5 tissue.storage.time.mo: 23.1 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected medications.atodc: U tobacco.atod: U manner.of.death: Natural cause.of.death: Cardiac Tamponade
GSM7040230 C-1488 tissue: Caudate cell type: striatal cells pair: 4 subject: 1488 Sex: M race: B age: 39 bmi: 33.1 pmi: 21.5 ph: 6.6 rin: 8.7 tissue.storage.time.mo: 127.2 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected infxn.dx: Asthma medications.atodc: N tobacco.atod: Y manner.of.death: Natural cause.of.death: Pulmonary Embolism
GSM7040231 P-1366 tissue: Putamen cell type: striatal cells pair: 1 subject: 1366 Sex: F race: W age: 35 bmi: 35.2 pmi: 11 ph: 6.1 rin: 7.1 tissue.storage.time.mo: 149 dx oud: OUD dx substances: Poly-SUD dx comorbid: Pain Disorder dur.oud: 8 dsm.iv.sud: Opioid Dependence; Sedative or Hypnotic or Anxiolytic Dependence dsm.iv.psych: Pain Disorder Associated with Both Psychological Factors and a General Medical Condition blood.toxicology: Methadone, Tramadol, Alprazolam, Diphenhydramine infxn.dx: Asthma; Recurrent Bronchitis medications.atodc: B, O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040232 P-13281 tissue: Putamen cell type: striatal cells pair: 6 subject: 13281 Sex: F race: W age: 54 bmi: 17.8 pmi: 12.5 ph: 6.9 rin: 8.8 tissue.storage.time.mo: 24.1 dx oud: OUD dx substances: Poly-SUD dx comorbid: None dur.oud: 5 dsm.iv.sud: Opioid Dependence; Sedative or Hypnotic or Anxiolytic Dependence dsm.iv.psych: None blood.toxicology: Fentanyl, Meprobamate medications.atodc: B, C, D, L, O, P tobacco.atod: Y manner.of.death: Accidental cause.of.death: Fentanyl Overdose
GSM7040233 P-1252 tissue: Putamen cell type: striatal cells pair: 4 subject: 1252 Sex: M race: W age: 40 bmi: 25.9 pmi: 21.1 ph: 6.5 rin: 7.6 tissue.storage.time.mo: 167.5 dx oud: OUD dx substances: Poly-SUD dx comorbid: MDD dur.oud: 13 dsm.iv.sud: Opioid Dependence; Alcohol Dependence; Cocaine Dependence; Polysubstance Dependence dsm.iv.psych: Major Depressive Disorder, Single Episode, Severe without Psychotic Features blood.toxicology: Morphine, Phenobarbital, Cocaine Metabolites infxn.dx: Arthritis medications.atodc: O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040234 P-1670 tissue: Putamen cell type: striatal cells pair: 12 subject: 1670 Sex: M race: W age: 42 bmi: 36.2 pmi: 18.5 ph: 6.5 rin: 8.1 tissue.storage.time.mo: 95.2 dx oud: OUD dx substances: OUD-only dx comorbid: None dur.oud: 17 dsm.iv.sud: Opioid Dependence dsm.iv.psych: None blood.toxicology: Morphine, Oxycodone infxn.dx: Osteomyelitis with Non-healing Ulcer; Recurring Foot Infections medications.atodc: O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040235 P-1262 tissue: Putamen cell type: striatal cells pair: 14 subject: 1262 Sex: M race: W age: 41 bmi: 29.9 pmi: 16.3 ph: 6.7 rin: 7.2 tissue.storage.time.mo: 168 dx oud: OUD dx substances: Poly-SUD dx comorbid: None dur.oud: 4 dsm.iv.sud: Opioid Dependence; Cocaine Dependence; Sedative or Hypnotic or Anxiolytic Dependence dsm.iv.psych: None blood.toxicology: Fentanyl, Norfentanyl, Lidocaine, Butalbital, Cocaine Metabolites, Trazodone, Alprazolam, Citalopram, Acetaminophen medications.atodc: B, D tobacco.atod: N manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040236 P-13114 tissue: Putamen cell type: striatal cells pair: 3 subject: 13114 Sex: F race: B age: 54 bmi: 27.6 pmi: 13.7 ph: 6.3 rin: 8.7 tissue.storage.time.mo: 46.8 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected infxn.dx: Arthritis medications.atodc: O tobacco.atod: Y manner.of.death: Natural cause.of.death: Cardiovascular Disease
GSM7040237 P-13151 tissue: Putamen cell type: striatal cells pair: 6 subject: 13151 Sex: F race: W age: 55 bmi: 44.9 pmi: 13.4 ph: 6.2 rin: 7 tissue.storage.time.mo: 41.7 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected infxn.dx: Degenerative Joint Disease medications.atodc: O tobacco.atod: N manner.of.death: Natural cause.of.death: Cardiovascular Disease
GSM7040238 P-612 tissue: Putamen cell type: striatal cells pair: 20 subject: 612 Sex: M race: W age: 60 bmi: 37.5 pmi: 9.6 ph: 6.8 rin: 9 tissue.storage.time.mo: 270.2 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected medications.atodc: N tobacco.atod: U manner.of.death: Accidental cause.of.death: Aspiration
GSM7040239 P-13291 tissue: Putamen cell type: striatal cells pair: 2 subject: 13291 Sex: M race: B age: 37 bmi: 36.3 pmi: 18 ph: 6.9 rin: 7.5 tissue.storage.time.mo: 23.1 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected medications.atodc: U tobacco.atod: U manner.of.death: Natural cause.of.death: Cardiac Tamponade
GSM7040240 P-1488 tissue: Putamen cell type: striatal cells pair: 4 subject: 1488 Sex: M race: B age: 39 bmi: 33.1 pmi: 21.5 ph: 6.6 rin: 8.7 tissue.storage.time.mo: 127.2 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected infxn.dx: Asthma medications.atodc: N tobacco.atod: Y manner.of.death: Natural cause.of.death: Pulmonary Embolism
GSM7040241 C-1034 tissue: Caudate cell type: striatal cells pair: 11 subject: 1034 Sex: F race: W age: 23 bmi: 20 pmi: 8.5 ph: 7 rin: 7.8 tissue.storage.time.mo: 197.2 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected medications.atodc: N tobacco.atod: N manner.of.death: Natural cause.of.death: Endocardial Fibroelastosis
GSM7040242 P-1034 tissue: Putamen cell type: striatal cells pair: 11 subject: 1034 Sex: F race: W age: 23 bmi: 20 pmi: 8.5 ph: 7 rin: 7.8 tissue.storage.time.mo: 197.2 dx oud: None dx substances: None dx comorbid: None dur.oud: 0 blood.toxicology: No substances detected medications.atodc: N tobacco.atod: N manner.of.death: Natural cause.of.death: Endocardial Fibroelastosis
GSM7040243 C-1572 tissue: Caudate cell type: striatal cells pair: 11 subject: 1572 Sex: F race: W age: 35 bmi: 40.9 pmi: 11.8 ph: 6.5 rin: 9.1 tissue.storage.time.mo: 111.4 dx oud: OUD dx substances: OUD-only dx comorbid: None dur.oud: 5 dsm.iv.sud: Opioid Dependence dsm.iv.psych: None blood.toxicology: Methadone, Methadone Metabolite, Trazodone infxn.dx: Osteoarthritis; Degenerative Changes of Cervical Spine medications.atodc: B, O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7040244 P-1572 tissue: Putamen cell type: striatal cells pair: 11 subject: 1572 Sex: F race: W age: 35 bmi: 40.9 pmi: 11.8 ph: 6.5 rin: 9.1 tissue.storage.time.mo: 111.4 dx oud: OUD dx substances: OUD-only dx comorbid: None dur.oud: 5 dsm.iv.sud: Opioid Dependence dsm.iv.psych: None blood.toxicology: Methadone, Methadone Metabolite, Trazodone infxn.dx: Osteoarthritis; Degenerative Changes of Cervical Spine medications.atodc: B, O, Z tobacco.atod: Y manner.of.death: Accidental cause.of.death: Combined Drug Overdose
GSM7421520 fenster2020-CTCTCTAT Sex: F weight (kg): 5.7 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 3/7/2023 age (year): 12.5 drug history: ~1500 mg/kg morphine (2018) pair: B inDrops v3 S1_1
GSM7421521 fenster2020-TATCCTCT Sex: F weight (kg): 5.7 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 3/7/2023 age (year): 12.5 drug history: ~1500 mg/kg morphine (2018) pair: B inDrops v3 S1_2
GSM7421522 fenster2020-GTAAGGAG Sex: M weight (kg): 7.8 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 2/5/2023 age (year): 14.6 drug history: ~1500 mg/kg morphine (2018) pair: C inDrops v3 S2_1
GSM7421523 fenster2020-ACTGCATA Sex: M weight (kg): 7.8 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 2/5/2023 age (year): 14.6 drug history: ~1500 mg/kg morphine (2018) pair: C inDrops v3 S2_2
GSM7421524 fenster2020-AAGGAGTA Sex: F weight (kg): 6.9 treatment: control tissue: nucleus accumbens date of_sacrifice: 9/5/2018 date of_birth: 5/8/2023 age (year): 10.4 drug history: ~200 mg/kg nicotine (2015 – 2017) - drug free ~1 yr prior to brain collection pair: B inDrops v3 S3_1
GSM7421525 fenster2020-CTAAGCCT Sex: F weight (kg): 6.9 treatment: control tissue: nucleus accumbens date of_sacrifice: 9/5/2018 date of_birth: 5/8/2023 age (year): 10.4 drug history: ~200 mg/kg nicotine (2015 – 2017) - drug free ~1 yr prior to brain collection pair: B inDrops v3 S3_2
GSM7421526 fenster2020-CGTCTAAT Sex: M weight (kg): 9.8 treatment: control tissue: nucleus accumbens date of_sacrifice: 8/24/2018 date of_birth: 5/1/2000 age (year): 18.3 drug history: ~2000 mg/kg cocaine (2008 -2017) - drug free ~1 yr prior to brain collection pair: D inDrops v3 S4_1
GSM7421527 fenster2020-TCTCTCCG Sex: M weight (kg): 9.8 treatment: control tissue: nucleus accumbens date of_sacrifice: 8/24/2018 date of_birth: 5/1/2000 age (year): 18.3 drug history: ~2000 mg/kg cocaine (2008 -2017) - drug free ~1 yr prior to brain collection pair: D inDrops v3 S4_2
GSM7421528 fenster2020-TCGACTAG Sex: M weight (kg): 9.6 treatment: control tissue: nucleus accumbens date of_sacrifice: 12/3/2018 date of_birth: 5/7/2023 age (year): 11.6 drug history: ~500 mg/kg cocaine (2011-2016)- drug free ~2 yrs prior to brain collection pair: C inDrops v3 S5_1
GSM7421529 fenster2020-TTCTAGCT Sex: M weight (kg): 9.6 treatment: control tissue: nucleus accumbens date of_sacrifice: 12/3/2018 date of_birth: 5/7/2023 age (year): 11.6 drug history: ~500 mg/kg cocaine (2011-2016)- drug free ~2 yrs prior to brain collection pair: C inDrops v3 S5_2
GSM7421530 fenster2020-CCTAGAGT Sex: M weight (kg): 7.2 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 5/7/2023 age (year): 12.3 drug history: ~1500 mg/kg morphine (2018) pair: A inDrops v3 S6_1
GSM7421531 fenster2020-GCGTAAGA Sex: M weight (kg): 7.2 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 5/7/2023 age (year): 12.3 drug history: ~1500 mg/kg morphine (2018) pair: A inDrops v3 S6_2
GSM7421532 fenster2020-CTATTAAG Sex: M weight (kg): 12.2 treatment: control tissue: nucleus accumbens date of_sacrifice: 12/3/2018 date of_birth: 6/9/2023 age (year): 9.5 drug history: ~1250 mg/kg cocaine (2012 – 2016) - drug free 2 yrs prior to brain collection pair: A inDrops v3 S7_1
GSM7421533 fenster2020-AAGGCTAT Sex: M weight (kg): 12.2 treatment: control tissue: nucleus accumbens date of_sacrifice: 12/3/2018 date of_birth: 6/9/2023 age (year): 9.5 drug history: ~1250 mg/kg cocaine (2012 – 2016) - drug free 2 yrs prior to brain collection pair: A inDrops v3 S7_2
GSM7421534 fenster2020-GAGCCTTA Sex: M weight (kg): 7 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 5/1/1997 age (year): 22.3 drug history: ~1500 mg/kg morphine (2018) pair: D inDrops v3 S8_1
GSM7421535 fenster2020-TTATGCGA Sex: M weight (kg): 7 treatment: morphine tissue: nucleus accumbens date of_sacrifice: 8/23/2019 date of_birth: 5/1/1997 age (year): 22.3 drug history: ~1500 mg/kg morphine (2018) pair: D inDrops v3 S8_2
Platform GPL18573; GPL27943: Illumina NextSeq 500 (Homo sapiens) Illumina NovaSeq 6000 (Macaca mulatta)
Indicator
D1-Matrix, D2-Matrix, D1-Striosome, D2-Striosome, D1/D2-Hybrid, Interneurons, D1-Matrix, D2-Matrix, D1-Striosome, D2-Striosome, D1/D2-Hybrid, Interneurons, OPRM1, PDYN, PENK, OPRK1, OPRD1
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