Detail information
ID ENOM00128
Accession GSE20160
Status Public on Feb 03, 2010
Title Gene Expression Data from Prefrontal Cortex and Nucleus Accumbens from Inbred Strains of Mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary
Catechol-O-methyltransferase (COMT) is an ubiquitously expressed enzyme that maintains basic biologic functions by inactivating catechol substrates. In humans, polymorphic variance at the COMT locus has been associated with modulation of pain sensitivity (Andersen & Skorpen, 2009) and risk for developing psychiatric disorders (Harrison & Tunbridge, 2008). A functional haplotype associated with increased pain sensitivity was shown to result in decreased COMT activity by altering mRNA secondary structure-dependent protein translation (Nackley et al., 2006). However, the exact mechanisms whereby COMT modulates pain sensitivity and behavior remain unclear and can be further studied in animal models. We have pursued a genome-wide approach to examining gene expression in multiple brain regions in inbred strains of mice and have discovered that Comt1 is differentially expressed. This expression difference was validated with qPCR. A B2-B4 Short Interspersed Element (SINE) was inserted in the 3'UTR of Comt1 in 14 strains that also shared a common haplotype. Experiments using mammalian expression vectors of full-length cDNA clones with and without the SINE element demonstrate that strains with the SINE haplotype (+SINE) have greater Comt1 enzymatic activity. +SINE mice also exhibit behavioral differences in anxiety assays and decreased pain sensitivity. These results suggest that a haplotype, defined by a 3'UTR B2-B4 SINE element, regulates Comt1 expression and mouse behavior.
Samples
GSM ID Sample info Characteristics Description
GSM505749 129S1/SvImJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: 129S1/SvImJ
GSM505750 A/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: A/J
GSM505751 AKR/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: AKR/J
GSM505752 BALB/cByJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: BALB/cByJ
GSM505753 BTBR_T+_tf/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: BTBR_T+_tf/J
GSM505754 BUB/BnJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: BUB/BnJ
GSM505755 C3H/HeJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: C3H/HeJ
GSM505756 C57BL/6J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: C57BL/6J
GSM505757 C57BR/cdJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: C57BR/cdJ
GSM505758 C58/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: C58/J
GSM505759 CBA/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: CBA/J
GSM505760 CE/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: CE/J
GSM505761 DBA/2J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: DBA/2J
GSM505762 FVB/NJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: FVB/NJ
GSM505763 I/LnJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: I/LnJ
GSM505764 KK/HlJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: KK/HlJ
GSM505765 MA/MyJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: MA/MyJ
GSM505766 MRL_MpJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: MRL/MpJ
GSM505767 NOD/LtJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: NOD/LtJ
GSM505768 NON/LtJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: NON/LtJ
GSM505769 NZO/HILtJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: NZO/HILtJ
GSM505770 NZW_LacJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: NZW_LacJ
GSM505771 P/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: P/J
GSM505772 PL/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: PL/J
GSM505773 RIIIS/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: RIIIS/J
GSM505774 SJL/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: SJL/J
GSM505775 SM/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: SM/J
GSM505776 SWR/J_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: SWR/J
GSM505777 WSB/EiJ_Male_Frontal_Cortex gender: male tissue: Frontal Cortex strain: WSB/EiJ
GSM505778 129S1/SvImJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: 129S1/SvImJ
GSM505779 A/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: A/J
GSM505780 AKR/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: AKR/J
GSM505781 BALB/cByJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: BALB/cByJ
GSM505782 BTBR_T+_tf/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: BTBR_T+_tf/J
GSM505783 BUB/BnJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: BUB/BnJ
GSM505784 C3H/HeJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: C3H/HeJ
GSM505785 C57BL/6J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: C57BL/6J
GSM505786 C57BR/cdJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: C57BR/cdJ
GSM505787 C58/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: C58/J
GSM505788 CBA/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: CBA/J
GSM505789 CE/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: CE/J
GSM505790 DBA/2J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: DBA/2J
GSM505791 FVB/NJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: FVB/NJ
GSM505792 I/LnJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: I/LnJ
GSM505793 KK/HlJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: KK/HlJ
GSM505794 MA/MyJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: MA/MyJ
GSM505795 NOD/LtJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: NOD/LtJ
GSM505796 NON/LtJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: NON/LtJ
GSM505797 NZW/LacJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: NZW/LacJ
GSM505798 P/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: P/J
GSM505799 PL/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: PL/J
GSM505800 RIIIS/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: RIIIS/J
GSM505801 SJL/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: SJL/J
GSM505802 SM/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: SM/J
GSM505803 SWR/J_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: SWR/J
GSM505804 WSB/EiJ_Male_Nuc_Acc gender: male tissue: Nucleus Accumbens strain: WSB/EiJ
Platform GPL1261: [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Indicator
Comt, Comt1
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