Overview of SARS-CoV-2 associated (Mutation)

ID Literature Title Group
1 39311876 Distinct Responses of Cystic Fibrosis Epithelial Cells to SARS-CoV-2 and Influenza A Virus
Mutation
2 33336251 Multisystem Inflammatory Syndrome in Children in February 2020 and Implications of Genomic Sequencing for SARS-CoV-2
Mutation
3 37796123 Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics
Mutation
4 38168680 Adaptation of SARS-CoV-2 to ACE2(H353K) mice reveals new spike residues that drive mouse infection
Mutation
5 34746689 Functional differences among the spike glycoproteins of multiple emerging severe acute respiratory syndrome coronavirus 2 variants of concern
Mutation
6 38124756 Novel Spike-stabilized trimers with improved production protect K18-hACE2 mice and golden Syrian hamsters from the highly pathogenic SARS-CoV-2 Beta variant
Mutation
7 38421180 The SARS-CoV-2 Spike is a virulence determinant and plays a major role on the attenuated phenotype of Omicron virus in a feline model of infection
Mutation
8 38172120 TRIM28-mediated nucleocapsid protein SUMOylation enhances SARS-CoV-2 virulence
Mutation
9 36062074 The neutralization of B.1.617.1 and B.1.1.529 sera from convalescent patients and BBIBP-CorV vaccines
Mutation
10 38332154 Virological characteristics of the SARS-CoV-2 Omicron XBB.1.5 variant
Mutation
11 38365933 SARS-CoV-2 rapidly evolves lineage-specific phenotypic differences when passaged repeatedly in immune-naive mice
Mutation
12 37651466 A single inactivating amino acid change in the SARS-CoV-2 NSP3 Mac1 domain attenuates viral replication in vivo
Mutation
13 37738983 Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis
Mutation
14 38415690 Vero cell-adapted SARS-CoV-2 strain shows increased viral growth through furin-mediated efficient spike cleavage
Mutation
15 38820002 Biophysical principles predict fitness of SARS-CoV-2 variants
Mutation
16 38675695 The Recognition Pathway of the SARS-CoV-2 Spike Receptor-Binding Domain to Human Angiotensin-Converting Enzyme 2
Mutation
17 39066312 Impact of Missense Mutations on Spike Protein Stability and Binding Affinity in the Omicron Variant
Mutation
18 38728322 Enhanced Surface Accessibility of SARS-CoV-2 Omicron Spike Protein Due to an Altered Glycosylation Profile
Mutation
19 38675725 Humoral Immune Response to SARS-CoV-2 Spike Protein Receptor-Binding Motif Linear Epitopes
Mutation
20 39059371 SARS-CoV-2 Omicron XBB lineage spike structures, conformations, antigenicity, and receptor recognition
Mutation
21 38495173 Unraveling the binding mechanisms of SARS-CoV-2 variants through molecular simulations
Mutation
22 38900824 The role of socio-economic disparities in the relative success and persistence of SARS-CoV-2 variants in New York City in early 2021
Mutation
23 38792736 Selective Pressure and Evolution of SARS-CoV-2 Lineages BF.7 and BQ.1.1 Circulating in Italy from July to December 2022
Mutation
24 38736992 Early Detection of the Emerging SARS-CoV-2 BA.2.86 Lineage Through Wastewater Surveillance Using a Mediator Probe PCR Assay - Shenzhen City, Guangdong Province, China, 2023
Mutation
25 39081516 The rising SARS-CoV-2 JN.1 variant: evolution, infectivity, immune escape, and response strategies
Mutation
26 39002680 Structural insights into immune escape at killer T cell epitope by SARS-CoV-2 Spike Y453F variants
Mutation
27 38868014 APOBEC3-related mutations in the spike protein-encoding region facilitate SARS-CoV-2 evolution
Mutation
28 38731879 Co-Mutations and Possible Variation Tendency of the Spike RBD and Membrane Protein in SARS-CoV-2 by Machine Learning
Mutation
29 38990941 Point mutations at specific sites of the nsp12-nsp8 interface dramatically affect the RNA polymerization activity of SARS-CoV-2
Mutation
30 38534781 Bio-Chemoinformatics-Driven Analysis of nsp7 and nsp8 Mutations and Their Effects on Viral Replication Protein Complex Stability
Mutation
31 38881676 Optimization and validation of a virus-like particle pseudotyped virus neutralization assay for SARS-CoV-2
Mutation
32 38762033 Visualizing the Active Site Oxyanion Loop Transition Upon Ensitrelvir Binding and Transient Dimerization of SARS-CoV-2 Main Protease
Mutation
33 33922914 Dieckol and Its Derivatives as Potential Inhibitors of SARS-CoV-2 Spike Protein (UK Strain: VUI 202012/01): A Computational Study
Mutation
34 35723978 SARS-CoV-2 Omicron Variant Binds to Human Cells More Strongly than the Wild Type: Evidence from Molecular Dynamics Simulation
Mutation
35 34223909 Limited Neutralization of Authentic Severe Acute Respiratory Syndrome Coronavirus 2 Variants Carrying E484K In Vitro
Mutation
36 34066729 Mutations in the B.1.1.7 SARS-CoV-2 Spike Protein Reduce Receptor-Binding Affinity and Induce a Flexible Link to the Fusion Peptide
Mutation
37 34337269 Conformational Variability Correlation Prediction of Transmissibility and Neutralization Escape Ability for Multiple Mutation SARS-CoV-2 Strains using SSSCPreds
Mutation
38 33635912 Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck
Mutation
39 34591922 Local topology and bifurcation hot-spots in proteins with SARS-CoV-2 spike protein as an example
Mutation
40 39584063 Enhanced detection and molecular modeling of adaptive mutations in SARS-CoV-2 coding and non-coding regions using the c/micro test
Mutation
41 34642465 Molecular rationale for SARS-CoV-2 spike circulating mutations able to escape bamlanivimab and etesevimab monoclonal antibodies
Mutation
42 34141447 Structural phylogenetic analysis reveals lineage-specific RNA repetitive structural motifs in all coronaviruses and associated variations in SARS-CoV-2
Mutation
43 34745235 Structural Insights on the SARS-CoV-2 Variants of Concern Spike Glycoprotein: A Computational Study With Possible Clinical Implications
Mutation
44 33681755 The new SARS-CoV-2 strain shows a stronger binding affinity to ACE2 due to N501Y mutant
Mutation
45 34335535 Mutations in SARS-CoV-2 ORF8 Altered the Bonding Network With Interferon Regulatory Factor 3 to Evade Host Immune System
Mutation
46 32853525 Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 M(pro)
Mutation
47 34214046 Chimeric spike mRNA vaccines protect against Sarbecovirus challenge in mice
Mutation
48 37764181 Molecular Evolutionary Analyses of the Spike Protein Gene and Spike Protein in the SARS-CoV-2 Omicron Subvariants
Mutation
49 38157379 Deep mutational scans of XBB.1.5 and BQ.1.1 reveal ongoing epistatic drift during SARS-CoV-2 evolution
Mutation
50 35113647 Divergent SARS-CoV-2 Omicron-reactive T and B cell responses in COVID-19 vaccine recipients
Mutation
51 35197485 An adjuvanted subunit SARS-CoV-2 spike protein vaccine provides protection against Covid-19 infection and transmission
Mutation
52 35455241 Durability and Cross-Reactivity of SARS-CoV-2 mRNA Vaccine in Adolescent Children
Mutation
53 36331143 Synthetic Platforms for Characterizing and Targeting of SARS-CoV-2 Genome Capping Enzymes
Mutation
54 35577445 First importations of SARS-CoV-2 P.1 and P.2 variants from Brazil to Spain and early community transmission
Mutation
55 36672896 Genomic Analysis of Non-B Nucleic Acids Structures in SARS-CoV-2: Potential Key Roles for These Structures in Mutability, Translation, and Replication?
Mutation
56 36799912 COVID-19: Attacks Immune Cells and Interferences With Antigen Presentation Through MHC-Like Decoy System
Mutation
57 35669291 In Silico Comparative Analysis of the Functional, Structural, and Evolutionary Properties of SARS-CoV-2 Variant Spike Proteins
Mutation
58 35619652 Rapid and Accurate Identification of SARS-CoV-2 Variants Using Real Time PCR Assays
Mutation
59 35346184 AstraZeneca COVID-19 vaccine induces robust broadly cross-reactive antibody responses in Malawian adults previously infected with SARS-CoV-2
Mutation
60 35321260 Heat Treatment Promotes Ubiquitin-Mediated Proteolysis of SARS-CoV-2 RNA Polymerase and Decreases Viral Load
Mutation
61 38004723 Characterization of SARS-CoV-2 Variants in Military and Civilian Personnel of an Air Force Airport during Three Pandemic Waves in Italy
Mutation
62 35989365 A comprehensive analysis of the mutational landscape of the newly emerging Omicron (B.1.1.529) variant and comparison of mutations with VOCs and VOIs
Mutation
63 38440013 Molecular Epidemiology of Omicron CH.1.1 Lineage: Genomic and Phenotypic Data Perspective
Mutation
64 36875932 Risk evaluation and mitigation strategies for newly detected SARS-CoV-2 Omicron BF.7 subvariant: A brief report
Mutation
65 37775095 Comparative Study of the Mutations Observed in the SARS-CoV-2 RBD Variants of Concern and Their Impact on the Interaction with the ACE2 Protein
Mutation
66 37093365 Binding affinity improvement analysis of multiple-mutant Omicron on 2019-nCov to human ACE2 by in silico predictions
Mutation
67 36537060 Omicron SARS-CoV-2 Variants in an In Silico Genomic Comparison Study with the Original Wuhan Strain and WHO-Recognized Variants of Concern
Mutation
68 35050643 SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein-ACE2 complex
Mutation
69 35363556 Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle
Mutation
70 35538074 Cumulative SARS-CoV-2 mutations and corresponding changes in immunity in an immunocompromised patient indicate viral evolution within the host
Mutation
71 35575289 In silico analysis of mutations near S1/S2 cleavage site in SARS-CoV-2 spike protein reveals increased propensity of glycosylation in Omicron strain
Mutation
72 35597364 SARS-COV-2 RBD (Receptor binding domain) mutations and variants (A sectional-analytical study)
Mutation
73 35677392 VE607 stabilizes SARS-CoV-2 Spike in the "RBD-up" conformation and inhibits viral entry
Mutation
74 35755247 Deciphering the Impact of Mutations on the Binding Efficacy of SARS-CoV-2 Omicron and Delta Variants With Human ACE2 Receptor
Mutation
75 35760381 Rapid and qualitative identification of SARS-CoV-2 mutations associated with variants of concern using a multiplex RT-PCR assay coupled with melting analysis
Mutation
76 35766492 COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme
Mutation
77 35784352 Glucocorticoids Bind to SARS-CoV-2 S1 at Multiple Sites Causing Cooperative Inhibition of SARS-CoV-2 S1 Interaction With ACE2
Mutation
78 35792280 Evidence of co-infections during Delta and Omicron SARS-CoV-2 variants co-circulation through prospective screening and sequencing
Mutation
79 35841797 Rapid displacement of SARS-CoV-2 variant Delta by Omicron revealed by allele-specific PCR in wastewater
Mutation
80 35850355 Wastewater surveillance allows early detection of SARS-CoV-2 omicron in North Rhine-Westphalia, Germany
Mutation
81 35931073 Determinants of Spike infectivity, processing, and neutralization in SARS-CoV-2 Omicron subvariants BA.1 and BA.2
Mutation
82 35943779 The spike receptor-binding motif G496S substitution determines the replication fitness of SARS-CoV-2 Omicron sublineage
Mutation
83 35952818 Omicron (B.1.1.529) - A new heavily mutated variant: Mapped location and probable properties of its mutations with an emphasis on S-glycoprotein
Mutation
84 38005860 Analyses of S Protein Homology Using the Genomes of SARS-CoV-2 Specimens Unveil Missing Links in the Temporal Order of Mutations in Its Variants
Mutation
85 38124749 Brewpitopes: a pipeline to refine B-cell epitope predictions during public health emergencies
Mutation
86 38685970 5-chloro-3-(2-(2,4-dinitrophenyl) hydrazono)indolin-2-one: synthesis, characterization, biochemical and computational screening against SARS-CoV-2
Mutation
87 36041326 Decoding the effects of spike receptor binding domain mutations on antibody escape abilities of omicron variants
Mutation
88 35617193 High prevalence of an alpha variant lineage with a premature stop codon in ORF7a in Iraq, winter 2020-2021
Mutation
89 35680610 Omicron (BA.1) and sub-variants (BA.1.1, BA.2, and BA.3) of SARS-CoV-2 spike infectivity and pathogenicity: A comparative sequence and structural-based computational assessment
Mutation
90 35777362 Atlas of currently available human neutralizing antibodies against SARS-CoV-2 and escape by Omicron sub-variants BA.1/BA.1.1/BA.2/BA.3
Mutation
91 35583124 A Class of Shark-Derived Single-Domain Antibodies can Broadly Neutralize SARS-Related Coronaviruses and the Structural Basis of Neutralization and Omicron Escape
Mutation
92 35595778 Assessment of mutations on RBD in the Spike protein of SARS-CoV-2 Alpha, Delta and Omicron variants
Mutation
93 35632499 Increased Receptor Affinity and Reduced Recognition by Specific Antibodies Contribute to Immune Escape of SARS-CoV-2 Variant Omicron
Mutation
94 35714668 BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection
Mutation
95 35739114 A broadly neutralizing antibody protects Syrian hamsters against SARS-CoV-2 Omicron challenge
Mutation
96 37596329 In silico prediction of immune-escaping hot spots for future COVID-19 vaccine design
Mutation
97 37635364 Genetic diversity and evolutionary dynamics of the Omicron variant of SARS-CoV-2 in Morocco
Mutation
98 38174083 Molecular epidemiology of SARS-CoV-2 in Northern South Africa: wastewater surveillance from January 2021 to May 2022
Mutation
99 36808314 In silico prediction of potential inhibitors for SARS-CoV-2 Omicron variant using molecular docking and dynamics simulation-based drug repurposing
Mutation
100 35863025 Rapid Detection of the Omicron (B.1.1.529) SARS-CoV-2 Variant Using a COVID-19 Diagnostic PCR Assay
Mutation
101 35745660 Computational Investigations of Traditional Chinese Medicinal Compounds against the Omicron Variant of SARS-CoV-2 to Rescue the Host Immune System
Mutation
102 38355869 Real-time evaluation of signal accuracy in wastewater surveillance of pathogens with high rates of mutation
Mutation
103 37651467 A yeast-based system to study SARS-CoV-2 Mpro structure and to identify nirmatrelvir resistant mutations
Mutation
104 35337015 Clinical Evaluation of a Fully-Automated High-Throughput Multiplex Screening-Assay to Detect and Differentiate the SARS-CoV-2 B.1.1.529 (Omicron) and B.1.617.2 (Delta) Lineage Variants
Mutation
105 35563345 Molecular Dynamics Studies on the Structural Stability Prediction of SARS-CoV-2 Variants Including Multiple Mutants
Mutation
106 35735410 Smartphone-Based SARS-CoV-2 and Variants Detection System using Colorimetric DNAzyme Reaction Triggered by Loop-Mediated Isothermal Amplification (LAMP) with Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)
Mutation
107 35744971 Structural Dynamics of the SARS-CoV-2 Spike Protein: A 2-Year Retrospective Analysis of SARS-CoV-2 Variants (from Alpha to Omicron) Reveals an Early Divergence between Conserved and Variable Epitopes
Mutation
108 35754360 Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis
Mutation
109 35861527 Discrimination of SARS-CoV-2 Omicron Sublineages BA.1 and BA.2 Using a High-Resolution Melting-Based Assay: a Pilot Study
Mutation
110 35233783 Active surveillance and early detection of community transmission of SARS-CoV-2 Mu variant (B.1.621) in the Brazilian Amazon
Mutation
111 35396511 Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage
Mutation
112 35547225 Identification and Analysis of SARS-CoV-2 Alpha Variants in the Largest Taiwan COVID-19 Outbreak in 2021
Mutation
113 35767821 The SARS-CoV-2 Delta variant induces an antibody response largely focused on class 1 and 2 antibody epitopes
Mutation
114 35867572 Shared N417-Dependent Epitope on the SARS-CoV-2 Omicron, Beta, and Delta Plus Variants
Mutation
115 35233544 SARS-CoV-2 Beta and Delta variants trigger Fc effector function with increased cross-reactivity
Mutation
116 35337800 Fractionation of sulfated galactan from the red alga Botryocladia occidentalis separates its anticoagulant and anti-SARS-CoV-2 properties
Mutation
117 35889075 Determining the International Spread of B.1.1.523 SARS-CoV-2 Lineage with a Set of Mutations Highly Associated with Reduced Immune Neutralization
Mutation
118 35262410 Vaccine-Induced Antibody Responses against SARS-CoV-2 Variants-Of-Concern Six Months after the BNT162b2 COVID-19 mRNA Vaccination
Mutation
119 38017265 Substitution spectra of SARS-CoV-2 genome from Pakistan reveals insights into the evolution of variants across the pandemic
Mutation
120 36551170 SARS-CoV-2 Delta Variant: Interplay between Individual Mutations and Their Allosteric Synergy
Mutation
121 37896834 Unraveling DPP4 Receptor Interactions with SARS-CoV-2 Variants and MERS-CoV: Insights into Pulmonary Disorders via Immunoinformatics and Molecular Dynamics
Mutation
122 35139368 Long-term, infection-acquired immunity against the SARS-CoV-2 Delta variant in a hamster model
Mutation
123 35194576 Impact of new variants on SARS-CoV-2 infectivity and neutralization: A molecular assessment of the alterations in the spike-host protein interactions
Mutation
124 35235558 Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants
Mutation
125 35550680 Delta spike P681R mutation enhances SARS-CoV-2 fitness over Alpha variant
Mutation
126 35754094 Genomic diversity of SARS-CoV-2 in Pakistan during the fourth wave of pandemic
Mutation
127 35788318 Inhibition of SARS-CoV-2 wild-type (Wuhan-Hu-1) and Delta (B.1.617.2) strains by marine sulfated glycans
Mutation
128 35853573 Genetic sequencing detected the SARS-CoV-2 delta variant in wastewater a month prior to the first COVID-19 case in Ahmedabad (India)
Mutation
129 35906172 Clinical and genomic signatures of SARS-CoV-2 Delta breakthrough infections in New York
Mutation
130 35965635 Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
Mutation
131 35533762 Biophysical Fitness Landscape of the SARS-CoV-2 Delta Variant Receptor Binding Domain
Mutation
132 35658876 SARS-CoV-2 Delta variant isolates from vaccinated individuals
Mutation
133 36786981 Relationship of Covid-19 Severity with SARS-CoV-2 NS8 Protein Mutations Depending on Virus Strain
Mutation
134 35783502 Plasticity in structure and assembly of SARS-CoV-2 nucleocapsid protein
Mutation
135 34982509 Engineered small extracellular vesicles displaying ACE2 variants on the surface protect against SARS-CoV-2 infection
Mutation
136 35628343 Complex Mutation Pattern of Omicron BA.2: Evading Antibodies without Losing Receptor Interactions
Mutation
137 35071665 Infection spread simulation technology in a mixed state of multi variant viruses
Mutation
138 35568025 LY-CoV1404 (bebtelovimab) potently neutralizes SARS-CoV-2 variants
Mutation
139 38397027 SARS-CoV-2 ORF7a Mutation Found in BF.5 and BF.7 Sublineages Impacts Its Functions
Mutation
140 35723403 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Mutational Pattern in the Fourth Pandemic Phase in Greece
Mutation
141 36936816 Reversal of the unique Q493R mutation increases the affinity of Omicron S1-RBD for ACE2
Mutation
142 35790190 Antibody evasion by SARS-CoV-2 Omicron subvariants BA.2.12.1, BA.4 and BA.5
Mutation
143 37548589 Probing conformational landscapes of binding and allostery in the SARS-CoV-2 omicron variant complexes using microsecond atomistic simulations and perturbation-based profiling approaches: hidden role of omicron mutations as modulators of allosteric signaling and epistatic relationships
Mutation
144 35792746 Neutralization of Omicron sublineages and Deltacron SARS-CoV-2 by three doses of BNT162b2 vaccine or BA.1 infection
Mutation
145 35582905 Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1
Mutation
146 38373700 AlphaFold2-Enabled Atomistic Modeling of Structure, Conformational Ensembles, and Binding Energetics of the SARS-CoV-2 Omicron BA.2.86 Spike Protein with ACE2 Host Receptor and Antibodies: Compensatory Functional Effects of Binding Hotspots in Modulating Mechanisms of Receptor Binding and Immune Escape
Mutation
147 35809570 Structural basis of human ACE2 higher binding affinity to currently circulating Omicron SARS-CoV-2 sub-variants BA.2 and BA.1.1
Mutation
148 35632430 Characteristics of the First 284 Patients Infected with the SARS-CoV-2 Omicron BA.2 Subvariant at a Single Center in the Apulia Region of Italy, January-March 2022
Mutation
149 35662412 Potent cross-reactive antibodies following Omicron breakthrough in vaccinees
Mutation
150 35746806 Resistance of SARS-CoV-2 Omicron BA.1 and BA.2 Variants to Vaccine-Elicited Sera and Therapeutic Monoclonal Antibodies
Mutation
151 35592756 Homologous or heterogenous vaccination boosters enhance neutralizing activities against SARS-CoV-2 Omicron BA.1 variant
Mutation
152 36108974 SARS-CoV-2 genetic diversity: Its impact on vaccine efficacy
Mutation
153 35729237 Binding and structural basis of equine ACE2 to RBDs from SARS-CoV, SARS-CoV-2 and related coronaviruses
Mutation
154 35240676 Antibody evasion properties of SARS-CoV-2 Omicron sublineages
Mutation
155 35733956 A Rapid, Whole Genome Sequencing Assay for Detection and Characterization of Novel Coronavirus (SARS-CoV-2) Clinical Specimens Using Nanopore Sequencing
Mutation
156 35139271 Final Analysis of Efficacy and Safety of Single-Dose Ad26.COV2.S
Mutation
157 35890058 The Biological Properties of the SARS-CoV-2 Cameroon Variant Spike: An Intermediate between the Alpha and Delta Variants
Mutation
158 35551247 Human-to-dog transmission of SARS-CoV-2, Colombia
Mutation
159 35584653 mRNA-1273 and Ad26.COV2.S vaccines protect against the B.1.621 variant of SARS-CoV-2
Mutation
160 36940010 Insights on the interaction of SARS-CoV-2 variant B.1.617.2 with antibody CR3022 and analysis of antibody resistance
Mutation
161 36092780 A computational evaluation of structural stability of omicron and delta mutations of SARS-CoV-2 spike proteins and human ACE-2 interactions
Mutation
162 34960755 SARS-CoV-2 Delta Variant Displays Moderate Resistance to Neutralizing Antibodies and Spike Protein Properties of Higher Soluble ACE2 Sensitivity, Enhanced Cleavage and Fusogenic Activity
Mutation
163 35632595 The E484K Substitution in a SARS-CoV-2 Spike Protein Subunit Vaccine Resulted in Limited Cross-Reactive Neutralizing Antibody Responses in Mice
Mutation
164 35610270 Competent immune responses to SARS-CoV-2 variants in older adults following two doses of mRNA vaccination
Mutation
165 35398602 SARS-CoV-2 infections in mRNA vaccinated individuals are biased for viruses encoding spike E484K and associated with reduced infectious virus loads that correlate with respiratory antiviral IgG levels
Mutation
166 35710544 Tracking the molecular evolution and transmission patterns of SARS-CoV-2 lineage B.1.466.2 in Indonesia based on genomic surveillance data
Mutation
167 36244092 Bioinformatics-based SARS-CoV-2 epitopes design and the impact of spike protein mutants on epitope humoral immunities
Mutation
168 35798721 Characterization of SARS-CoV-2 Spike mutations important for infection of mice and escape from human immune sera
Mutation
169 36454775 Genomic analysis of SARS-CoV-2 variants of concern circulating in Hawai'i to facilitate public-health policies
Mutation
170 35790808 Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections
Mutation
171 35798770 Impact of the temperature on the interactions between common variants of the SARS-CoV-2 receptor binding domain and the human ACE2
Mutation
172 34724885 UK B.1.1.7 (Alpha) variant exhibits increased respiratory replication and shedding in nonhuman primates
Mutation
173 35706980 Competition for dominance within replicating quasispecies during prolonged SARS-CoV-2 infection in an immunocompromised host
Mutation
174 35766497 Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda
Mutation
175 35753659 Brief dispersion of a putative B.1.1.28-derived SARS-CoV-2 lineage harboring additional N234P and E471Q spike protein mutations in individuals crossing the Argentina-Brazil border
Mutation
176 35305699 Neutralisation sensitivity of the SARS-CoV-2 omicron (B.1.1.529) variant: a cross-sectional study
Mutation
177 35396165 A self-amplifying RNA vaccine protects against SARS-CoV-2 (D614G) and Alpha variant of concern (B.1.1.7) in a transmission-challenge hamster model
Mutation
178 35698660 The phylodynamics of SARS-CoV-2 during 2020 in Finland
Mutation
179 35273335 The SARS-CoV-2 Alpha variant exhibits comparable fitness to the D614G strain in a Syrian hamster model
Mutation
180 35304531 In vitro evaluation of therapeutic antibodies against a SARS-CoV-2 Omicron B.1.1.529 isolate
Mutation
181 35310621 Determinants of SARS-CoV-2 transmission to guide vaccination strategy in an urban area
Mutation
182 35585980 Humoral Response to BNT162b2 Vaccine Against SARS-CoV-2 Variants Decays After Six Months
Mutation
183 35871089 In vitro activity of therapeutic antibodies against SARS-CoV-2 Omicron BA.1, BA.2 and BA.5
Mutation
184 35902787 Initial introduction and spread of the SARS-CoV-2 AY.4.2.1 Delta variant in Bulgaria, a genomic insight
Mutation
185 35801250 Molecular Epidemiology of AY.28 and AY.104 Delta Sub-lineages in Sri Lanka
Mutation
186 35234859 Age-Specific Changes in Virulence Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants of Concern
Mutation
187 35273217 A SARS-CoV-2 Wuhan spike virosome vaccine induces superior neutralization breadth compared to one using the Beta spike
Mutation
188 36512569 Genomic landscape of alpha-variant of SARS-CoV-2 circulated in Pakistan
Mutation
189 35632749 SARS-CoV-2 Lineage A.27: New Data from African Countries and Dynamics in the Context of the COVID-19 Pandemic
Mutation
190 35658928 Long-range enhancement of N501Y-endowed mouse infectivity of SARS-CoV-2 by the non-RBD mutations of Ins215KLRS and H655Y
Mutation
191 34888394 A Multidimensional Cross-Sectional Analysis of Coronavirus Disease 2019 Seroprevalence Among a Police Officer Cohort: The PoliCOV-19 Study
Mutation
192 36327885 D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2
Mutation
193 34957346 Ultra-sensitive and fast optical detection of the spike protein of the SARS-CoV-2 using AgNPs/SiNWs nanohybrid based sensors
Mutation
194 35013735 Phylogenetic estimates of SARS-CoV-2 introductions into Washington State
Mutation
195 35090638 Safety and immunogenicity of an AS03-adjuvanted SARS-CoV-2 recombinant protein vaccine (CoV2 preS dTM) in healthy adults: interim findings from a phase 2, randomised, dose-finding, multicentre study
Mutation
196 35104067 Neutralizing Antibodies and Cytokines in Breast Milk After Coronavirus Disease 2019 (COVID-19) mRNA Vaccination
Mutation
197 35168024 Development of SARS-CoV-2 variant protein microarray for profiling humoral immunity in vaccinated subjects
Mutation
198 35215963 Characterization of the First SARS-CoV-2 Isolates from Aotearoa New Zealand as Part of a Rapid Response to the COVID-19 Pandemic
Mutation
199 35255849 Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California
Mutation
200 35311662 Reduced DMPC and PMPC in lung surfactant promote SARS-CoV-2 infection in obesity
Mutation
201 35355624 Molecular recognition of SARS-CoV-2 spike glycoprotein: quantum chemical hot spot and epitope analyses
Mutation
202 35388091 Phylogeography and genomic epidemiology of SARS-CoV-2 in Italy and Europe with newly characterized Italian genomes between February-June 2020
Mutation
203 35530749 Neutralizing Effect of Synthetic Peptides toward SARS-CoV-2
Mutation
204 35578696 Genomic characteristics of SARS-CoV-2 in Beijing, China, 2021
Mutation
205 35587428 ACE2 decoy receptor generated by high-throughput saturation mutagenesis efficiently neutralizes SARS-CoV-2 and its prevalent variants
Mutation
206 35624123 Transmission of SARS-CoV-2 from humans to animals and potential host adaptation
Mutation
207 35643065 Self-derived peptides from the SARS-CoV-2 spike glycoprotein disrupting shaping and stability of the homotrimer unit
Mutation
208 35660994 RT-LAMP assay combining multi-fluorescent probes for SARS-CoV-2 RNA detection and variant differentiation
Mutation
209 35676810 Genomic Epidemiology of Imported Cases of COVID-19 in Guangdong Province, China, October 2020 - May 2021
Mutation
210 35711424 Heterogeneous SARS-CoV-2-Neutralizing Activities After Infection and Vaccination
Mutation
211 35726918 Microbiome Analysis for Wastewater Surveillance during COVID-19
Mutation
212 35760380 Classification of Omicron BA.1, BA.1.1, and BA.2 sublineages by TaqMan assay consistent with whole genome analysis data
Mutation
213 35809511 In silico analysis of SARS-CoV-2 spike protein N501Y and N501T mutation effects on human ACE2 binding
Mutation
214 35816514 The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation
Mutation
215 35831773 Continent-wide evolutionary trends of emerging SARS-CoV-2 variants: dynamic profiles from Alpha to Omicron
Mutation
216 35862952 RG203KR Mutations in SARS-CoV-2 Nucleocapsid: Assessing the Impact Using a Virus-Like Particle Model System
Mutation
217 35911728 Heterologous saRNA Prime, DNA Dual-Antigen Boost SARS-CoV-2 Vaccination Elicits Robust Cellular Immunogenicity and Cross-Variant Neutralizing Antibodies
Mutation
218 35936792 Decreased Interfacial Dynamics Caused by the N501Y Mutation in the SARS-CoV-2 S1 Spike:ACE2 Complex
Mutation
219 37892846 Fluorometric Detection of SARS-CoV-2 Single-Nucleotide Variant L452R Using Ligation-Based Isothermal Gene Amplification
Mutation
220 37352723 Identification of key mutations responsible for the enhancement of receptor-binding affinity and immune escape of SARS-CoV-2 Omicron variant
Mutation
221 36686884 Characterization and phylogenetic analysis of Iranian SARS-CoV-2 genomes: A phylogenomic study
Mutation
222 36548384 Retrospective in silico mutation profiling of SARS-CoV-2 structural proteins circulating in Uganda by July 2021: Towards refinement of COVID-19 disease vaccines, diagnostics, and therapeutics
Mutation
223 36415740 Performance evaluation of Novaplex SARS-CoV-2 variants assay kit series for SARS-CoV-2 detection using single nucleotide polymorphisms
Mutation
224 36173498 Using In Silico Bioinformatics Algorithms for the Accurate Prediction of the Impact of Spike Protein Mutations on the Pathogenicity, Stability, and Functionality of the SARS-CoV-2 Virus and Analysis of Potential Therapeutic Targets
Mutation
225 36039645 Missense mutations in spike protein of SARS-CoV-2 delta variant contribute to the alteration in viral structure and interaction with hACE2 receptor
Mutation
226 35493173 Theoretical insights into the effect of halogenated substituent on the electronic structure and spectroscopic properties of the favipiravir tautomeric forms and its implications for the treatment of COVID-19
Mutation
227 35912566 Unveiling the "Template-Dependent" Inhibition on the Viral Transcription of SARS-CoV-2
Mutation
228 34968787 Computational investigation reveals that the mutant strains of SARS-CoV2 have differential structural and binding properties
Mutation
229 34990583 A bivalent nanoparticle vaccine exhibits potent cross-protection against the variants of SARS-CoV-2
Mutation
230 35080377 Multiplexed Lab-on-a-Chip Bioassays for Testing Antibodies against SARS-CoV-2 and Its Variants in Multiple Individuals
Mutation
231 35151002 Rapid biosensing SARS-CoV-2 antibodies in vaccinated healthy donors
Mutation
232 35677879 Biochemical Characterization of SARS-CoV-2 Spike RBD Mutations and Their Impact on ACE2 Receptor Binding
Mutation
233 35932731 Most frequently harboured missense variants of hACE2 across different populations exhibit varying patterns of binding interaction with spike glycoproteins of emerging SARS-CoV-2 of different lineages
Mutation
234 37796794 Structure, dynamics and free energy studies on the effect of point mutations on SARS-CoV-2 spike protein binding with ACE2 receptor
Mutation
235 36681163 A modified high-resolution melting-based assay (HRM) to identify the SARS-CoV-2 N501Y variant
Mutation
236 35764775 Temporal changes in the accessory protein mutations of SARS-CoV-2 variants and their predicted structural and functional effects
Mutation
237 38283360 Mutational analysis of SARS-CoV-2 ORF6-KPNA2 binding interface and identification of potent small molecule inhibitors to recuse the host immune system
Mutation
238 36852417 Probing the mechanical properties of ORF3a protein, a transmembrane channel of SARS-CoV-2 virus: Molecular dynamics study
Mutation
239 35728038 Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis
Mutation
240 38293247 Elucidating the binding mechanism of SARS-CoV-2 NSP6-TBK1 and structure-based designing of phytocompounds inhibitors for instigating the host immune response
Mutation
241 35389264 SARS-CoV-2 nsp5 Exhibits Stronger Catalytic Activity and Interferon Antagonism than Its SARS-CoV Ortholog
Mutation
242 36473671 SARS-CoV-2 Non-structural protein 1(NSP1) mutation virulence and natural selection: Evolutionary trends in the six continents
Mutation
243 35760824 Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada
Mutation
244 38257765 Structural Basis for the Inhibition of SARS-CoV-2 M(pro) D48N Mutant by Shikonin and PF-07321332
Mutation
245 36467259 Structural differences in 3C-like protease (Mpro) from SARS-CoV and SARS-CoV-2: molecular insights revealed by Molecular Dynamics Simulations
Mutation
246 34739037 Evaluating the Neutralizing Ability of a CpG-Adjuvanted S-2P Subunit Vaccine Against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants of Concern
Mutation
247 34888860 Unusual pattern of thrombotic events in young adult non-critically ill patients with COVID-19 may result from an undiagnosed inherited and acquired form of thrombophilia
Mutation
248 35104836 SARS-CoV-2 Omicron variant replication in human bronchus and lung ex vivo
Mutation
249 35369500 Atorvastatin Effectively Inhibits Ancestral and Two Emerging Variants of SARS-CoV-2 in vitro
Mutation
250 35377298 SARS-CoV-2 variants of concern alpha, beta, gamma and delta have extended ACE2 receptor host ranges
Mutation
251 35398519 Immune evasion and chronological decrease in titer of neutralizing antibody against SARS-CoV-2 and its variants of concerns in COVID-19 patients
Mutation
252 35486915 Biomechanical Dependence of SARS-CoV-2 Infections
Mutation
253 35546574 Identifying SARS-CoV-2 Variants of Concern through Saliva-Based RT-qPCR by Targeting Recurrent Mutation Sites
Mutation
254 35598737 Whole-genome sequencing of SARS-CoV-2 reveals diverse mutations in circulating Alpha and Delta variants during the first, second, and third waves of COVID-19 in South Kivu, east of the Democratic Republic of the Congo
Mutation
Contents
Description
Disease Group Note
  • The label in Group indicates that the disease is mentioned in mutation or integration research. Click the eye label to view the corresponding module information.