-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE100044 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (H4R3me2s ChIP-Seq) Chip-seq GPL23366 8
L
 Detail
GSE100266 Human Immunodeficiency Virus (HIV) The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin Remodeling Complexes ATAC-seq
Chip-seq
RNA-seq 		GPL16791 32
X
E
C
L
 Detail
GSE100376 Human Immunodeficiency Virus (HIV) HIV-1 infection of human monocyte-derived dendritic cells with and without the integrase inhibitor, Raltegravir (ATAC-Seq) ATAC-seq GPL18573 24
C
L
 Detail
GSE100400 Hepatitis B Virus (HBV) Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx Chip-seq
RNA-seq
4C_cccDNA 		GPL18573
GPL19057 		31
X
E
C
L
 Detail
GSE100458 Epstein-Barr(EBV) Gene expression in EBV-positive versus EBV-loss clones derived from endemic Burkitt lymphoma cell lines Expression array GPL23270 14
X
E
L
 Detail
GSE102203 Epstein-Barr(EBV) Expression data from EBV+ and EBV- plasmablastic lymphomas Expression array GPL19251 10
X
E
 Detail
GSE103728 Hepatitis C virus (HCV) High-resolution liver cancer genomic profiling links etiology, epigenetic and mutation signatures [ChIP-Seq] Chip-seq GPL16791 24
C
L
 Detail
GSE103730 Hepatitis C virus (HCV) High-resolution liver cancer genomic profiling links etiology, epigenetic and mutation signatures Chip-seq
RNA-seq 		GPL16791 42
X
E
L
 Detail
GSE104621 Kaposi's sarcoma-associated herpesvirus (KSHV) N6-methyladenosine modification in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection [MeRIP-seq] MeRIP-seq GPL16791 8
L
 Detail
GSE105884 Zika virus (ZIKV) Transcriptomic profile of circulating CD8 T cells in donors with ZIKV infection RNA-seq GPL16791 60
X
E
L
 Detail
GSE10789 Human T-cell Lymphotropic Virus type 1 (HTLV1) Induction of the IL-9 gene by HTLV-I Tax stimulates the spontaneous proliferation of primary adult T-cell leukemia cells Expression array GPL3779 6
X
E
L
 Detail
GSE110345 Hepatitis B Virus (HBV) Relative abundance of the integrant-derived viral RNAs in infected tissues harvested from chronic HBV carriers RNA-seq GPL16791 4
X
E
 Detail
GSE110511 Dengue fever virus (DENV) Leo1 occupancy in presence of dengue virus NS5 Chip-seq GPL20301 24
C
 Detail
GSE113702 Influenza Virus (IV) H3K27ac profiling of human tracheobronchial epithelial cells during infection with H1N1, H3N2, and H5N1 influenza virus [ChIP-seq] Chip-seq GPL18573
GPL20301 		52
C
 Detail
GSE117988 Merkel Cell Polyomavirus (MCV) scRNAseq reveals mechanisms of Merkel cell carcinoma acquired immunotherapy resistance [1] scRNA-seq GPL16791 6
S
L
 Detail
GSE118056 Merkel Cell Polyomavirus (MCV) scRNAseq reveals mechanisms of Merkel cell carcinoma acquired immunotherapy resistance [2] scRNA-seq GPL24676 4
S
L
 Detail
GSE120375 Varicella zoster virus (VZV) Global gene expression analysis of CD14+ monocytes and CD4+ effector memory T cells before and during fingolimod treatment RNA-seq GPL16791 24
X
E
 Detail
GSE121385 Varicella zoster virus (VZV) RNA-Sequencing data of Varicella Zoster Virus (VZV)-infected human dermal fibroblasts (HDF) RNA-seq GPL16791 6
X
E
L
 Detail
GSE123782 Herpes simplex virus type 1 (HSV1) Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program RNA-seq
scRNA-seq 		GPL18573
GPL20301 		39
X
E
L
 Detail
GSE123835 Zika virus (ZIKV) Zika virus antagonizes interferon response in patients and disrupts RIG-I-MAVS interaction through its CARD-TM domains RNA-seq GPL16791 6
X
E
L
 Detail
GSE12452 Epstein-Barr(EBV) mRNA expression profiling of nasopharyngeal carcinoma Expression array GPL570 41
X
E
L
 Detail
GSE124801 Herpes simplex virus type 1 (HSV1) The epigenetic landscapes of histone modifications on HSV-1 genome in human THP-1 cells [ChIP-seq] Chip-seq GPL26016 60
L
 Detail
GSE124802 Herpes simplex virus type 1 (HSV1) The epigenetic landscapes of histone modifications on HSV-1 genome in human THP-1 cells [RNA-seq] RNA-seq GPL26016 16
X
E
L
 Detail
GSE124856 Merkel Cell Polyomavirus (MCV) Genome-wide maps of LSD1-RCOR2 binding in Merkel cell carcinoma cells Chip-seq GPL18573 8
C
L
 Detail
GSE125686 Human Immunodeficiency Virus (HIV) Transcriptomic profiling of peripheral blood NK cells of chronic HBV, HCV and HIV patients RNA-seq GPL11154
GPL16791
GPL18573 		62
X
E
L
 Detail
GSE126831 Hepatitis C virus (HCV) A temporal proteogenomic atlas of HCV-host interactions unravels cell circuits driving viral and metabolic liver disease RNA-seq GPL18573 63
X
E
L
 Detail
GSE128121 Human Immunodeficiency Virus (HIV) Pharmacological Inhibition of PPARγ Reverses HIV Latency but Prevents Viral Production/Infectivity while Boosting Th17 Functions RNA-seq GPL20301 16
X
E
L
 Detail
GSE130891 Dengue fever virus (DENV);Hepatitis D virus (HDV);Zika virus (ZIKV) MeRIP-seq for host response to Flaviviridae infection MeRIP-seq GPL16791 48
L
 Detail
GSE131257 Hepatitis B Virus (HBV) RNA Helicase DDX5, a Negative Regulator of Wnt Activation and Hepatocyte Reprogramming in Hepatitis B Virus-associated Hepatocellular Carcinoma ATAC-seq
RNA-seq 		GPL16791 19
X
E
C
L
 Detail
GSE132367 Dengue fever virus (DENV) Molecular signatures of dengue virus-specific IL-10/IFN-γ co-producing CD4 T cells and their association with severe dengue disease RNA-seq GPL16791 57
X
E
L
 Detail
GSE132777 Kaposi's sarcoma-associated herpesvirus (KSHV) ChIP-Seq of IRF4, BATF, and vIRF3 in BC-3 cells Chip-seq GPL11154
GPL18573 		10
C
L
 Detail
GSE133086 Crimean-Congo hemorrhagic fever virus (CCHFV) Dual RNA-Seq characterization of host and pathogen gene expression in liver cells infected with Crimean-Congo Hemorrhagic Fever Virus RNA-seq GPL20301 24
X
E
L
 Detail
GSE135069 Influenza Virus (IV) Antiviral potential of human IFN-α subtypes against influenza H3N2 infection in human lung explants RNA-seq GPL24676 10
X
E
L
 Detail
GSE135644 Epstein-Barr(EBV) Expression data of EBV-positive and EBV-negative subclones of gastric adenocarcinoma cell line AGS Expression array GPL6106 10
X
E
L
 Detail
GSE135740 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide maps of chromatin modifications in KSHV-transformed primary effusion lymphoma cell lines Chip-seq GPL11154
GPL18573 		10
C
L
 Detail
GSE136189 Human T-cell Lymphotropic Virus type 1 (HTLV1) Genome-wide methylation analysis of T-cells using Infinium HumanMethylation BeadChip Methylation profiling (Array) GPL13534
GPL23976 		40
M
 Detail
GSE136217 Human cytomegalovirus (HCMV) Dual-Sequencing of dendritic cells infected with cytomegalovirus RNA-seq GPL18573
GPL24958 		7
X
E
L
 Detail
GSE136867 Merkel Cell Polyomavirus (MCV) Conversion of Sox2-Dependent Merkel Cell Carcinoma to a Differentiated Neuron-like Phenotype by T Antigen Inhibition scRNA-seq GPL18573 2
S
L
 Detail
GSE138080 Human Papillomavirus(HPV) Identification of deregulated pathways, key regulators, and novel miRNA-mRNA interactions in HPV-mediated transformation Expression array GPL4133 35
X
E
L
 Detail
GSE138342 Human T-cell Lymphotropic Virus type 1 (HTLV1) Epigenetic pattern after EZH1,2 inhibition in lymohoma cells ChIP-on-chip GPL19784 117
L
 Detail
GSE139324 Human Papillomavirus(HPV) Immune landscape of viral- and carcinogen-drived head and neck cancer scRNA-seq GPL18573 63
S
L
 Detail
GSE140662 Human Papillomavirus(HPV) Expression data of keratinocytes from condyloma acuminata and skin tissues Expression array GPL17586 8
X
E
L
 Detail
GSE143026 Human Papillomavirus(HPV) Viral integration transforms chromatin to drive oncogenesis ATAC-seq
Chip-seq
RNA-seq 		GPL16791 30
X
C
 Detail
GSE144329 Human Immunodeficiency Virus (HIV) A unique viral reservoir landscape associated with durable natural control of HIV-1 infection [ATAC-seq] ATAC-seq GPL21697 96
C
L
 Detail
GSE144332 Human Immunodeficiency Virus (HIV) A unique viral reservoir landscape associated with durable natural control of HIV-1 infection [RNA-seq] RNA-seq GPL21697 75
X
E
L
 Detail
GSE147063 Kaposi's sarcoma-associated herpesvirus (KSHV) Global epigenomic analysis of primary effusion lymphoma identifies MYC super-enhancers and enhancer RNAs associated with KSHV infection Chip-seq
GRO-seq
4C-seq 		GPL18573
GPL27467 		10
C
 Detail
GSE147406 Merkel Cell Polyomavirus (MCV) Polyomavirus and neuroendocrine regulomes converge to establish tumor dependencies Chip-seq GPL18573 39
C
 Detail
GSE148796 Human Immunodeficiency Virus (HIV) Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in humanized mice by scRNA-seq scRNA-seq GPL18573 4
S
L
 Detail
GSE150390 Human Immunodeficiency Virus (HIV) Complementation can maintain a quasispecies of drug sensitive and resistant HIV Variation GPL23868 207 Detail
GSE152114 Human cytomegalovirus (HCMV) Transcriptome analysis of Human Cytomegalovirus (HCMV) infected nasal turbinate tissues RNA-seq GPL11154 4
X
E
L
 Detail
GSE152255 Dengue fever virus (DENV) Myeloid regulation signature persists after virus clearance in mild human primary dengue serotype 2 infection RNA-seq GPL11154 99
X
E
L
 Detail
GSE152641 Dengue fever virus (DENV);Ebola virus;Influenza Virus (IV);Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptomic Similarities and Differences in Host Response between SARS-CoV-2 and Other Viral Infection RNA-seq GPL24676 86
X
E
L
 Detail
GSE153218 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Bulk RNA sequencing of SARS-CoV-2 infected alveolar type I- and type II like cells RNA-seq GPL18573 16
X
E
L
 Detail
GSE154386 Dengue fever virus (DENV) Temporally integrated single cell RNA sequencing analysis of controlled and natural DENV-1 infections scRNA-seq GPL24676 30
S
L
 Detail
GSE155672 Dengue fever virus (DENV) Innate Lymphoid Cells Activation and Transcriptomic Changes in Response to Human Dengue Infection RNA-seq GPL20795 12
X
E
L
 Detail
GSE156060 Influenza Virus (IV) Influenza non-structural protein 1 (NS1) localization plays a key role in the anatagonism of host antiviral processes Chip-seq
RNA-seq 		GPL24676 28
X
E
C
 Detail
GSE157829 Human Immunodeficiency Virus (HIV) An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Single-Cell Transcriptomics scRNA-seq GPL16791 7
S
L
 Detail
GSE158935 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide transcriptome analysis of KSHV long-term-infected endothelial (LTC) and parental uninfected TIVE cells [RNA-seq] RNA-seq GPL16791
GPL24676 		6
X
E
L
 Detail
GSE160201 Zika virus (ZIKV) ZIKV prevents host mRNA export from the nucleus by disrupting UPF1 function RNA-seq GPL18573 16
X
E
 Detail
GSE161783 Zika virus (ZIKV) Transcriptomic and epigenetic investigation of Zika virus (ZIKV) infection in human monocyte-derived dendritic cells and other cell types Chip-seq
RNA-seq
csRNA-seq 		GPL18573
GPL20301
GPL24676 		51
X
E
C
L
 Detail
GSE162323 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) SARS-CoV-2 utilizes a multipronged strategy to suppress host protein synthesis RNA-seq GPL24676
GPL29320 		42
X
E
 Detail
GSE162632 Influenza Virus (IV) Single-cell RNA-sequencing reveals pervasive but highly cell type-specific genetic ancestry effects on the response to viral infection scRNA-seq GPL24676 292
S
L
 Detail
GSE162914 Human Immunodeficiency Virus (HIV) Transcriptomic biomarker pathways associated with death in HIV-infected patients with cryptococcal meningitis RNA-seq GPL16791 211
X
E
L
 Detail
GSE163623 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Distinct mechanisms for TMPRSS2 expression explain organ-specific inhibition of SARS-CoV-2 infection by enzalutamide [ChIP-Seq] Chip-seq GPL24676 5
C
L
 Detail
GSE163707 Human cytomegalovirus (HCMV) Human plasmacytoid dendritic cells mount a distinct antiviral response to virus-infected cells RNA-seq GPL18573
GPL29107 		96
X
E
L
 Detail
GSE163952 Herpes simplex virus type 1 (HSV1) Neurodegeneration in herpes simplex virus 1 infected human brain organoids RNA-seq
scRNA-seq 		GPL18573
GPL20301
GPL26180
GPL26236
GPL29543
GPL29544 		40
X
E
S
L
 Detail
GSE163959 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptome analysis of Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)-infected and Influenza A/H1N1-infected nasal turbinate and lung tissues RNA-seq GPL18573 48
X
E
L
 Detail
GSE164264 Human Immunodeficiency Virus (HIV) RNA sequencing of Chlamydia trachomatis-stimulated HIV-1-infected CD4 T cells RNA-seq GPL23227 6
X
E
 Detail
GSE164485 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) The landscape of human brain immune response in patients with severe COVID-19 scRNA-seq GPL16791 36
S
L
 Detail
GSE164690 Human Papillomavirus(HPV) Investigating Immune and Non-Immune Cell Interactions in Head and Neck Tumors by Single-Cell RNA Sequencing scRNA-seq GPL18573 51
S
L
 Detail
GSE164839 Human cytomegalovirus (HCMV) Transcriptome analysis of HCMV infected and mock-infected Kasumi-3 cells at 24 hours post infection RNA-seq GPL18573
GPL24958 		4
X
E
L
 Detail
GSE164841 Human cytomegalovirus (HCMV) Chromatin accessibilty analysis of HCMV infected and mock-infected Kasumi-3 cells at 24 hours post infection ATAC-seq GPL18573
GPL24958 		6
L
 Detail
GSE164842 Human cytomegalovirus (HCMV) Pol2 and H3K27Ac and H3K27me3 occupancy of the viral and host genomes in HCMV infected Kasumi-3 cells at 24 hpi Chip-seq GPL20301
GPL29603 		21
L
 Detail
GSE164843 Human cytomegalovirus (HCMV) Comparison of HCMV nascent and steady state transcriptomes expresssed in the Kasumi-3 latency model at early times post-infection RNA-seq GPL18573
GPL24958 		10
X
E
L
 Detail
GSE164844 Human cytomegalovirus (HCMV) Pol2 and H3K27Ac and H3K27me3 occupancy of the viral genome in HCMV infected Kasumi-3 cells at early times post infection Chip-seq GPL29601
GPL29602 		24
L
 Detail
GSE164845 Human cytomegalovirus (HCMV) Pol2 occupancy of the viral and host genomes in HCMV infected Kasumi-3 cells at 24 hpi Chip-seq GPL18573
GPL20301
GPL24958 		8
L
 Detail
GSE164861 Human cytomegalovirus (HCMV) Epigenetic reprogramming of host and viral genes by Human Cytomegalovirus infection in Kasumi-3 myeloid progenitor cells at early times post-infection Chip-seq
RNA-seq
ATAC-seq 		GPL18573
GPL20301
GPL24958
GPL29601
GPL29602
GPL29603 		79
C
L
 Detail
GSE165132 Human Immunodeficiency Virus (HIV) HIV-exposed seronegative sex workers express high levels of regulatory T cells, low levels of T cell activation and an intact ectocervical tissue microenvironment RNA-seq GPL21697 56
X
E
L
 Detail
GSE165194 Epstein-Barr(EBV) Defective Epstein-Barr Virus Genomes and Atypical Viral Gene Expression in B-Cell Lines Derived from Multiple Myeloma Patients [I] RNA-seq GPL18573 3
X
E
L
 Detail
GSE165703 Human Immunodeficiency Virus (HIV) Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (ATAC-Seq) ATAC-seq GPL20301 82
C
L
 Detail
GSE165705 Human Immunodeficiency Virus (HIV) Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (ChIP-Seq) Chip-seq GPL24676 30
C
L
 Detail
GSE165708 Human Immunodeficiency Virus (HIV) Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (RNA-Seq) RNA-seq GPL20301 100
X
E
L
 Detail
GSE165883 Human Papillomavirus(HPV) Recurrent human papillomavirus-related head and neck cancer undergoes metabolic re-programming and is driven by oxidative phosphorylation RNA-seq GPL18573 20
X
E
 Detail
GSE166253 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptomic characteristics and impaired immune function of patients who retest positive for SARS-CoV-2 RNA RNA-seq GPL20795 26
X
E
 Detail
GSE167075 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) m6A modification in SARS-CoV-2 virus regulates host cell innate immune response MeRIP-seq
RNA-seq 		GPL29320
GPL29742 		16
X
E
L
 Detail
GSE167211 Human Immunodeficiency Virus (HIV) Mechanisms of Th17 and Treg cell dysregulation in oral mucosal inflammation during HIV disease RNA-seq GPL11154 1
X
E
L
 Detail
GSE168557 Human T-cell Lymphotropic Virus type 1 (HTLV1) Highly selective HSP90 inhibitor, pimitespib, demonstrates its potent growth suppressive activity to adult T-cell leukemia in preclinical models (Pt1-3) Expression array GPL16699 6
X
E
L
 Detail
GSE168598 Human cytomegalovirus (HCMV) Transcriptomics of Kidney Transplant Recipients after Cytomegalovirus DNAemia RNA-seq GPL21290 154
X
E
L
 Detail
GSE169310 Human Immunodeficiency Virus (HIV) H3K4me3 histone ChIPseq Analysis Reveals Molecular Mechanisms Responsible for Neutrophil dysfunction in HIV-infected individuals Chip-seq GPL21697 8
L
 Detail
GSE169622 Human Papillomavirus(HPV) Epigenome analysis of normal and cervical cancer with human papilloma virus type 16 or 18 positive Methylation profiling (Array) GPL21145 9
M
L
 Detail
GSE169634 Human cytomegalovirus (HCMV) HCMV infected Human Fibroblasts UL84 IE2 ChIPSeq Chip-seq GPL18573 12
C
L
 Detail
GSE171494 Epstein-Barr(EBV) Defective Epstein-Barr Virus Genomes and Atypical Viral Gene Expression in B-Cell Lines Derived from Multiple Myeloma Patients [III] Variation GPL18573 2
L
 Detail
GSE171518 Human cytomegalovirus (HCMV) Role of the HCMV immediate early proteins in controlling the HCMV and cellular epigenomes Chip-seq GPL29977 16
C
L
 Detail
GSE172194 Human T-cell Lymphotropic Virus type 1 (HTLV1) Epigenomic Regulation of Human T-Cell Leukemia Virus by Chromatin-Insulator CTCF Chip-seq GPL30008 24
L
 Detail
GSE173897 Hepatitis B Virus (HBV) Expression of genes associated with poor prognosis from hepatocellular carcinoma are increased in peripheral blood from Hmong with active hepatitis B infection RNA-seq GPL20301 95
X
E
 Detail
GSE175797 Varicella zoster virus (VZV) Targeted RNA sequencing of varicella zoster virus-infected human brain vascular adventitial fibroblasts RNA-seq GPL18573 6
X
E
L
 Detail
GSE176428 Zika virus (ZIKV) Dengue and Zika RNA-RNA interactomes reveal virus permissive and restrictive factors in human cells RNA-seq GPL15520 8
X
E
 Detail
GSE177046 Epstein-Barr(EBV) Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [RNA-seq] RNA-seq GPL11154 6
X
E
L
 Detail
GSE178621 Zika virus (ZIKV) Microglia regulate Zika virus infection in human developing brain and glioma RNA-seq GPL24676 28
X
L
 Detail
GSE181805 Human Papillomavirus(HPV) Comparison between HPV+ / p16+ versus the HPV-/p16- from HNSCC patients Expression array GPL17586 25
X
E
L
 Detail
GSE181906 Epstein-Barr(EBV) Competitive Endogenous RNA Landscape in Epstein-Barr Virus Associated Nasopharyngeal Carcinoma RNA-seq GPL24676 24
X
E
 Detail
GSE182788 Human cytomegalovirus (HCMV) Transcriptomic analysis of neural-induced SHED cells with/without HCMV infection RNA-seq GPL11154 4
X
E
L
 Detail
GSE183048 Human Papillomavirus(HPV) Recurrent Integration of Human Papillomavirus Genomes at Transcriptional Regulatory Hubs Chip-seq GPL20301 24
C
L
 Detail
GSE185234 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (ATAC-seq I) ATAC-seq GPL18573 18
L
 Detail
GSE185235 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (ATAC-seq I) ATAC-seq GPL18573 22
L
 Detail
GSE185236 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq II) Omni-ATAC-seq GPL18573 24
L
 Detail
GSE185238 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq I) Omni-ATAC-seq GPL18573 14
L
 Detail
GSE185240 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq III) Omni-ATAC-seq GPL18573 6
L
 Detail
GSE185241 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes ATAC-seq
Omni-ATAC-seq
RNA-seq
Chip-seq 		GPL18573
GPL28038 		160
C
L
 Detail
GSE185246 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (ChIPmentation) Chip-seq GPL18573
GPL28038 		40
L
 Detail
GSE185618 Human cytomegalovirus (HCMV) Differences in RNA polymerase II complexes and their interactions with surrounding chromatin on human and cytomegalovirus genomes [ChIP-seq] Chip-seq GPL20301
GPL24676 		25
C
L
 Detail
GSE187515 Human Immunodeficiency Virus (HIV) Single-cell multiomics of CD4+ T cell clones in HIV-1 infected individuals scRNA-seq GPL15520
GPL20301
GPL24676 		104
S
L
 Detail
GSE189602 Human T-cell Lymphotropic Virus type 1 (HTLV1) DNA demethylating agents and EZH2 inhibitors for Adult T cell leukemia [Illumina] Methylation profiling (Array) GPL21145 4
M
L
 Detail
GSE190680 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Immune transcriptome analysis of COVID-19 patients infected with SARS-CoV-2 variants carrying the E484K escape mutation identifies a distinct gene module RNA-seq GPL24676 100
X
E
L
 Detail
GSE19080 Human T-cell Lymphotropic Virus type 1 (HTLV1) Gene expression profiling in patients infected with HTLV-1: Identification of ATL and HAM/TSP-specific genetic profiles Expression array GPL9686 38
E
 Detail
GSE191176 Influenza Virus (IV) A novel anti-influenza combined therapy assessed by single cell RNA-sequencing scRNA-seq GPL20301 6
S
L
 Detail
GSE193759 Human cytomegalovirus (HCMV) Downregulation of Neurodevelopmental Gene Expression in iPSC-Derived Cerebral Organoids Upon Infection by Human Cytomegalovirus RNA-seq GPL11154
GPL24259 		12
X
E
L
 Detail
GSE196215 Human Papillomavirus(HPV) Human papillomavirus 42 is an oncogenic driver in Digital Papillary Adenocarcinoma [tumors] RNA-seq GPL24676 8
X
L
 Detail
GSE197461 Human Papillomavirus(HPV) Decipher heterogeneity of cervical squamous cell carcinoma and adenocarcinoma with different HPV status: combining scRNA and TCR-seq with 3D organoid scRNA-seq GPL24676 16
S
L
 Detail
GSE197949 Influenza Virus (IV) Human alveolar progenitors generate dual lineage bronchioalveolar organoids scRNA-seq GPL18573 30
S
L
 Detail
GSE198332 Epstein-Barr(EBV) Repression of DERL3 via DNA methylation by Epstein-Barr virus latent membrane protein 1 in nasopharyngeal carcinoma [methylation data] Methylation profiling (Array) GPL21145 7
M
L
 Detail
GSE198334 Epstein-Barr(EBV) Repression of DERL3 via DNA methylation by Epstein-Barr virus latent membrane protein 1 in nasopharyngeal carcinoma [ChIP-seq] Chip-seq GPL18573 4
C
L
 Detail
GSE198339 Human Immunodeficiency Virus (HIV) Single-cell RNA sequencing of peripheral blood mononuclear cells reveals immune signaling dysregulations in people living with HIV and atherosclerosis scRNA-seq GPL24676 8
S
L
 Detail
GSE198542 Zika virus (ZIKV) Type I interferons govern Zika virus resistance of human macrophages and microglia RNA-seq GPL18573 12
X
E
L
 Detail
GSE198809 Human Immunodeficiency Virus (HIV) Changes in subcutaneous white adipose tissue cellular composition and molecular programs underlie glucose intolerance in persons with HIV scRNA-seq GPL24676 46
S
L
 Detail
GSE199029 Human Papillomavirus(HPV) Integrative genome analysis reveals low T cell infiltration as the primary feature of tobacco use in HPV(+) oropharyngeal cancer Variation
RNA-seq 		GPL32069 44
E
L
 Detail
GSE19905 Kaposi's sarcoma-associated herpesvirus (KSHV) Global analysis of DNA methylation patterns on the latent KSHV episome in PEL and de novo infected endothelial cells MeDIP GPL9942 8
L
 Detail
GSE19906 Kaposi's sarcoma-associated herpesvirus (KSHV) Global analysis of histone modification patterns on the latent KSHV episome ChIP-on-chip GPL9942 12
L
 Detail
GSE199816 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptional Differences Between COVID-19 and Sepsis RNA-seq GPL28038 27
X
E
L
 Detail
GSE199850 Hepatitis B Virus (HBV) Intrarenal Single-Cell Sequencing of Hepatitis B Virus-Associated Membranous Nephropathy scRNA-seq GPL20795 1
S
L
 Detail
GSE202410 Human Immunodeficiency Virus (HIV) Single cell transcriptomics reveals HIV viral transcription and compartmentalized immune perturbations in the CNS of people with HIV despite antiretroviral treatment scRNA-seq GPL20301 24
S
L
 Detail
GSE202670 Kaposi's sarcoma-associated herpesvirus (KSHV) Epigenetic reprogramming of Kaposi’s sarcoma-associated herpesvirus during hypoxic reactivation Chip-seq GPL9052 14
C
L
 Detail
GSE205204 Human Immunodeficiency Virus (HIV) Comprehensive RNA-Seq Reveals Molecular Changes in Kidney Malignancy Among People Living with HIV RNA-seq GPL24676 14
X
E
L
 Detail
GSE205320 Human Immunodeficiency Virus (HIV) Combined protein and transcript single cell RNA sequencing in human peripheral blood mononuclear cells scRNA-seq GPL24676 5
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GSE206147 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Single-cell RNA sequencing analysis of a COVID-19– associated maculopapular rash in a patient with psoriasis treated with ustekinumab scRNA-seq GPL24676 1
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GSE207589 Kaposi's sarcoma-associated herpesvirus (KSHV) KSHV infection of Endothelial Colony Forming Cells RNA-seq GPL11154 12
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GSE207923 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Timecourse of SARS-CoV-2 Infection with New York & Washington Isolates RNA-seq GPL24676 27
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GSE208077 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (OMNI-ATAC-seq IV) Omni-ATAC-seq GPL18573 12
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GSE208078 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (RNA-seq II) RNA-seq GPL18573 24
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GSE208281 Epstein-Barr(EBV) RNA-seq data of nasopharyngeal carcinoma (NPC) in non-endemic areas RNA-seq GPL18573 50
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GSE209698 Zika virus (ZIKV) Transcriptional profile regulated by 1,25-dihydroxyvitamin D (Calcitriol) in primary Human Monocyte-Derived Macrophages infected by zika virus RNA-seq GPL18573 16
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GSE211161 Hepatitis C virus (HCV) Effects of HCV JFH-1 on gene expression during 48 hour infection of Primary Human Hepatocytes RNA-seq GPL16791 4
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GSE211651 Human Immunodeficiency Virus (HIV) Enhancing HIV-1 latency reversal through regulating the elongating RNA Pol II pause-release by a small-molecule disruptor of PAF1C Chip-seq
RNA-seq
PRO-seq 		GPL18573
GPL24676 		39
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GSE211934 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathological effects of SARS-CoV-2 and α-synuclein preformed fibril in hESC-derived dopaminergic neurons RNA-seq GPL24676 8
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GSE212871 Hepatitis C virus (HCV) Mechanisms of Restoring T Cell Immunity after Cure of Chronic Viral Infection RNA-seq GPL24676 128
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GSE215262 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptional patterns of peripheral blood mononuclear cells (PBMCs) in SARS-CoV-2 infected patients with different severity and outcome RNA-seq GPL24676 25
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GSE217832 Human cytomegalovirus (HCMV) Human cytomegalovirus dysregulates neurodevelopmental pathways in cerebral organoids RNA-seq GPL18573 8
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GSE218199 Herpes simplex virus type 1 (HSV1) Comparative analysis of innate immune responses to viral infection among animals scRNA-seq GPL24676
GPL27943
GPL30573
GPL30616 		16
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GSE220859 Human Immunodeficiency Virus (HIV) HIV-1 integration in microglia (ChIP-seq of CTCF-KD/-NT) Chip-seq GPL24676 11
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GSE221680 Japanese encephalitis virus (JEV) Whole transcriptome analysis after JEV infection in SH-SY5Y RNA-seq GPL16791 6
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GSE221685 Human Immunodeficiency Virus (HIV) The latent HIV reservoir in the brain of people with HIV under antiretroviral therapy (ChIP-Seq) Chip-seq GPL24676 6 Detail
GSE221686 Human Immunodeficiency Virus (HIV) The latent HIV reservoir in the brain of people with HIV under antiretroviral therapy (scATAC-Seq) scATAC-seq GPL24676 3 Detail
GSE221688 Human Immunodeficiency Virus (HIV) The latent HIV reservoir in the brain of people with HIV under antiretroviral therapy Chip-seq
scATAC-Seq
scRNA-Seq 		GPL24676 12
C
 Detail
GSE223328 Epstein-Barr(EBV) Plasma cell infiltration and tissue destruction are hallmarks of Epstein-Barr virus infection in periodontitis Expression array GPL21185 16
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GSE224047 Human T-cell Lymphotropic Virus type 1 (HTLV1) RNAseq-differentiated gene expression profile of people living with HTLV-1 in the Brazilian Amazon region: a pilot study RNA-seq GPL18573 10
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GSE224901 Hepatitis B Virus (HBV) Sera of individuals chronically infected with hepatitis B virus (HBV) contain diverse RNA types produced by HBV replication or derived from integrated HBV DNA RNA-seq GPL24676 21
X
 Detail
GSE225248 Epstein-Barr(EBV) Enhancer infestation drives tumorigenic activation of inactive compartment in Epstein-Barr virus-positive nasopharyngeal carcinoma [ChIP-Seq] Chip-seq GPL18573 12
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GSE225704 Influenza Virus (IV) Genome graphs detect human polymorphisms in active epigenomic state during influenza infection [ATAC-seq] ATAC-seq GPL24676 3
C
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GSE225706 Influenza Virus (IV) Genome graphs detect human polymorphisms in active epigenomic state during influenza infection [ChIP-seq] Chip-seq GPL24676 6
C
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GSE226438 Merkel Cell Polyomavirus (MCV) Single cell RNA-seq profiling of patient-derived Merkel cell carcinoma tumor samples scRNA-seq GPL24676 11
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GSE226620 Human Papillomavirus(HPV) CD161 expression of TRM cells counteracts the HPV-associated clinical benefit in oropharyngeal cancer immunotherapy scRNA-seq GPL20795 30
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GSE226865 Dengue fever virus (DENV) Structure-first identification of RNA elements that regulate dengue virus genome architecture and replication Structure GPL33221
GPL33222
GPL33223
GPL33224 		12
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GSE227054 Merkel Cell Polyomavirus (MCV) Cancer-specific CD8 T cell frequency at baseline in blood correlates with response to PD-1 blockade in Merkel cell carcinoma scRNA-seq GPL24676 14
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 Detail
GSE227708 Merkel Cell Polyomavirus (MCV) Cancer-specific CD8 T cell frequency at baseline in blood correlates with response to PD-1 blockade in Merkel cell carcinoma scRNA-seq GPL24676 16
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GSE227709 Merkel Cell Polyomavirus (MCV) STING agonism leads to durable clinical response in an anti-PD-L1 refractory patient: Tumor antigen-specific, single cell level biomarker analyses scRNA-seq GPL24676 6
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GSE228078 Human Immunodeficiency Virus (HIV) Single cell transcriptomic atlas of human plasmacytoid dendritic cells reveals a distinct cytotoxic-like subset in HIV-1 infected individuals scRNA-seq GPL24676 12
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GSE228495 Herpes simplex virus type 1 (HSV1) Encephalitis and poor neuronal death-mediated control of herpes simplex virus in human inherited RIPK3 deficiency RNA-seq GPL24676 14
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GSE229390 Herpes simplex virus type 2 (HSV2) HSV-2 Triggers Upregulation of MALAT1 in CD4+ T cells and Promotes HIV Latency Reversal (Bulk RNA-Seq) RNA-seq GPL24676 27
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GSE230758 Merkel Cell Polyomavirus (MCV) Merkel cell polyomavirus small tumor antigen contributes to immune evasion by interfering with type I interferon signaling [ChIP-Seq] Chip-seq GPL16791 20
C
 Detail
GSE232843 Kaposi's sarcoma-associated herpesvirus (KSHV) Prolonged Kaposi's Sarcoma-associated Herpesvirus vIL-6 Exposure Enhances Inflammatory Responses by Epigenetic Reprogramming (RNA-seq) RNA-seq GPL24676 12
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GSE233426 Epstein-Barr(EBV) NPC268 whole-genome bisulfite sequencing (WGBS) Whole-genome bisulfite sequencing (WGBS) GPL24676 1
L
 Detail
GSE233747 Human Immunodeficiency Virus (HIV) scRNA-seq analysis of human peripheral blood mononuclear cells collected at the acute HIV-1 infection timepoint scRNA-seq GPL24676 40
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GSE236281 Hepatitis B Virus (HBV) Comparative Transcriptome Analysis of Peripheral Blood Mononuclear Cells Across Clinical Cohorts of Hepatitis B Virus Induced Hepatocellular Carcinoma and Chronic Asymptomatic Hepatitis B Infection in Nigeria RNA-seq GPL15520 12
X
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GSE240450 Hepatitis B Virus (HBV) Hepatitis B virus X protein contributes to hepatocellular carcinoma via upregulation of KIAA1429 methyltransferase and mRNA m6A hypermethylation of HSPG2/Perlecan [MeRIP-Seq] MeRIP-Seq GPL11154 4 Detail
GSE240694 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Long-term effects of Omicron BA.2 breakthrough infection on immunity-metabolism balance: a 6-month prospective study scRNA-seq GPL24676 9
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GSE241095 Kaposi's sarcoma-associated herpesvirus (KSHV) Bulk RNA-sequencing of normal and Kaposi sarcoma tissues from skin and gastrointestinal tract RNA-seq GPL20301
GPL24676 		44
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GSE241702 Herpes simplex virus type 2 (HSV2) Mucosal CCL28 Chemokine Improves Protection against Genital Herpes through Mobilization of Antiviral Effector Memory CCR10+CD44+ CD62L-CD8+ T Cells and Memory CCR10+B220+CD27+ B Cells into the Infected Vaginal Mucosa RNA-seq GPL20301 8
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 Detail
GSE242170 Herpes simplex virus type 1 (HSV1) IFN-λ signaling protects mice from severe HSV-1 skin disease II RNA-seq GPL24676 21
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GSE243442 Yellow fever virus (YFV) Integrative biology of patients acutely infected with yellow fever virus RNA-seq GPL18573 55
X
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 Detail
GSE243629 Influenza Virus (IV) A single-cell atlas of the peripheral immune response in patients with influenza A virus infection scRNA-seq GPL24676 11
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GSE245832 Human cytomegalovirus (HCMV) DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells Whole-genome bisulfite sequencing (WGBS) GPL24676 14
L
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GSE246059 Epstein-Barr(EBV) Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (ATAC-Seq) ATAC-seq GPL18573
GPL24676 		8
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GSE246060 Epstein-Barr(EBV) Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (ChIP-Seq) Chip-seq GPL24676 26
C
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GSE246082 Human Immunodeficiency Virus (HIV) Dysregulated neuroimmune interactions and sustained type I interferon signaling after human immunodeficiency virus type 1 infection of human iPSC derived microglia and cerebral organoids RNA-seq GPL20301 6
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GSE247322 Hepatitis B Virus (HBV) Association of HBsAg levels with differential gene expression in NK, CD8 T, and memory B cells in treated patients with chronic HBV scRNA-seq GPL24676 27
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GSE248772 Human cytomegalovirus (HCMV) Transcriptome profiling of human cytomegalovirus-infected trophoblasts RNA-seq GPL24676 84
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GSE249663 Herpes simplex virus type 1 (HSV1) The roles of nuclear orphan receptor NR2F6 in anti-viral innate immunity [ChIP-seq] Chip-seq GPL24676 8 Detail
GSE249665 Herpes simplex virus type 1 (HSV1) The roles of nuclear orphan receptor NR2F6 in anti-viral innate immunity Chip-seq
RNA-seq 		GPL24676 18
X
E
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GSE250106 Hepatitis B Virus (HBV) Epitranscriptomic cytidine methylation of the Hepatitis B viral RNA encapsidation signal ensure the reverse transcription of viral RNA [PA-m5C-seq] PA-m5C-seq GPL16791
GPL18573 		4
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 Detail
GSE250107 Hepatitis B Virus (HBV) Epitranscriptomic cytidine methylation of the Hepatitis B viral RNA encapsidation signal ensure the reverse transcription of viral RNA [PA-m6A-seq] PA-m6A-seq GPL16791 2
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 Detail
GSE251924 Hepatitis E virus (HEV) The unique proteasomal processing of viral ORF1 drives HEV-induced liver fibrosis RNA-seq GPL24676 6
X
E
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GSE252863 Hepatitis B Virus (HBV) Liver-restricted Type I Interferon Signature Precedes Liver Damage in Chronic Hepatitis B Patients Stopping Antiviral Therapy scRNA-seq GPL16791 10
S
 Detail
GSE253562 Human cytomegalovirus (HCMV) DNA methylation profiling of lung transplant recipients Targeted-bisulfite sequencing (TBS-seq) GPL24676 92
M
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GSE254734 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [ATAC-seq] ATAC-seq GPL24676 8 Detail
GSE254735 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [RNA-Seq] RNA-seq GPL24676 4
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GSE254736 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [ChIP-seq] Chip-seq GPL24676 12 Detail
GSE254737 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [HiChIP] HiChIP GPL24676 6 Detail
GSE254741 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity ATAC-seq
ChIP-seq
HiChIP
RNA-seq 		GPL24676 30
C
 Detail
GSE260925 Kaposi's sarcoma-associated herpesvirus (KSHV) Unveiling the Role of KSHV-Infected Human Mesenchymal Stem Cells in Kaposi's Sarcoma Initiation RNA-seq GPL24676 24
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GSE262469 Hepatitis E virus (HEV) AMPK activation in response to hepatitis E virus infection inhibited viral replication by attenuating autophagosome and promoting innate immunity RNA-seq GPL24676 15
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GSE262515 Hepatitis B Virus (HBV) Optimized RNA Interference Therapeutics Combined with Interleukin-2 mRNA for Treating Hepatitis B Virus Infection RNA-seq GPL16791
GPL17021 		21
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GSE262621 Human Immunodeficiency Virus (HIV) Gene expression profiling of HIV-associated diffuse large B-cell lymphomas from Malawi RNA-seq GPL24676 70
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GSE270130 Hepatitis B Virus (HBV) A nucleosome switch primes Hepatitis B Virus infection [ChIP-Seq] Chip-seq GPL24676 27
C
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GSE270937 Hepatitis B Virus (HBV) Differential methylation patterns in paternally imprinted gene promoter regions in sperm from hepatitis B virus infected individuals DNA methylation sequencing GPL24676 35
M
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GSE272361 Herpes simplex virus type 1 (HSV1) Herpes simplex virus 1 infection of human brain organoids and pancreatic stem cell-islets drives transcripts associated with Alzheimer’s disease and autoimmune diseases RNA-seq GPL24676 9
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GSE274780 Hepatitis E virus (HEV) The glutamate receptor antagonist ifenprodil inhibits hepatitis E virus infection RNA-seq GPL18573 12
X
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GSE279208 Dengue fever virus (DENV) Unraveling potential gene biomarkers for dengue infection through RNA sequencing RNA-seq GPL28038 26
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GSE279982 Human Immunodeficiency Virus (HIV) DNA Methylation Biomarkers for Cervical Cancer Risk Prediction in HIV-Positive Nigerian Women Methylation profiling (Array) GPL21145 576
M
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GSE280006 Kaposi's sarcoma-associated herpesvirus (KSHV) BiP/GRP78 is a pro-viral factor for diverse dsDNA viruses that promotes the survival and proliferation of cells upon KSHV infection RNA-seq GPL21697 14
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GSE280380 Kaposi's sarcoma-associated herpesvirus (KSHV);Human cytomegalovirus (HCMV) DNA virus infections shape transposable element activity in vitro and in vivo (HCMV,KSHV,DUX4) RNA-seq GPL24676 54
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GSE281836 Herpes simplex virus type 1 (HSV1) Multifaceted roles of RAP80 during the Herpes simplex virus 1 life cycle Chip-seq GPL24676 2
C
 Detail
GSE283771 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Effects of SARS-CoV-2 S protein on endothelial cell thrombosis RNA-seq GPL11154 6
X
E
 Detail
GSE285166 Herpes simplex virus type 1 (HSV1) Bisulfite sequencing of methylation changes in the D4Z4 region caused by HSV-1 Bisulfite-seq GPL24676 2 Detail
GSE285167 Herpes simplex virus type 1 (HSV1) Chromatin immunoprecipitation sequencing of transcription factor DUX4 Chip-seq GPL24676 4
C
 Detail
GSE30736 Human Immunodeficiency Virus (HIV) Genome-wide binding map of the HIV Tat protein to the human genome (ChIP-chip) Chip-seq
ChIP on chip 		GPL7032 1
L
 Detail
GSE30738 Human Immunodeficiency Virus (HIV) Genome-wide binding map of the HIV Tat protein to the human genome (ChIP-Seq) Chip-seq GPL9115 2
C
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GSE35462 Hepatitis B Virus (HBV) Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses (ChIP-Seq dataset) Chip-seq GPL11154 4
L
 Detail
GSE35465 Hepatitis B Virus (HBV) Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses Chip-seq
RNA-seq 		GPL11154 6
C
L
 Detail
GSE38411 Kaposi's sarcoma-associated herpesvirus (KSHV) Cohesins Repress KSHV Immediate Early Gene Transcription During Latency Chip-seq GPL9115
GPL15642 		5
C
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GSE40774 Human Papillomavirus(HPV) Integrative genomic analysis identifies clinically relevant subtypes of head and neck cancer characterized by hypoxia, T-cell infiltration, and EMT Expression array GPL13497 134
X
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GSE42867 Epstein-Barr(EBV) Gene expression changes in subclones of a Burkitt lymphoma cell line with different patterns of EBV latent infection Expression array GPL570 12
X
E
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GSE45919 Epstein-Barr(EBV) Peripheral blood gene expression in human experiencing primary EBV infection (HT12) Expression array GPL10558 24
X
E
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GSE51993 Human Papillomavirus(HPV) microRNA differential regulations gradually mediate genomic instability during cervical intraepithelial neoplasia progression Expression array GPL8179
GPL10558 		48
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GSE52244 Human T-cell Lymphotropic Virus type 1 (HTLV1) Exon-expression profiling of CD4+ T cells derived from HTLV-1-infected individuals with or without malignancy Expression array GPL5188 15
X
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GSE52421 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide ChIP sequence analysis of KSHV-infected primary effusion lymphoma (PEL) cell line BCBL-1 and human umbilical vein endothelial TIVE-LTC cells Chip-seq GPL10999 18
C
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GSE53271 Human cytomegalovirus (HCMV) Release of Human Cytomegalovirus from latency by a KAP1/TRIM28 phosphorylation switch Chip-seq GPL11154 2
C
L
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GSE55542 Human Papillomavirus(HPV) Gene expression profiling of HPV-active, HPV-inactive and HPV-negative oropharyngeal squamous cell carcinomas Expression array GPL17077 36
X
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GSE55550 Human Papillomavirus(HPV) Gene expression profiles of oral and oropharyngeal cancers from European American and African American patients Expression array GPL17077 155
X
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GSE56144 Kaposi's sarcoma-associated herpesvirus (KSHV) Site-Specific Association with Host and Viral Chromatin by KSHV LANA and its Reversal during Lytic Reactivation Chip-seq
RNA-seq 		GPL9115
GPL16791 		33
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GSE58240 Epstein-Barr(EBV) Gene expression profiling of the response to interferon beta in EBV-transformed and primary B cells of patients with multiple sclerosis Expression array GPL10558 32
X
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GSE64877 Hepatitis B Virus (HBV) Global re-wiring of p53 transcription regulation by the hepatitis B virus X (HBx) protein [ChIP-Seq] Chip-seq GPL9052 2
C
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GSE65858 Human Papillomavirus(HPV) Gene expression patterns and TP53 mutations are associated with HPV RNA status, lymph node metastasis, and survival in head and neck cancer Expression array GPL10558 270
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GSE67848 Hepatitis C virus (HCV) Characterization of Type I Interferon pathway during Hepatic Differentiation of Human Pluripotent Stem Cells and hepatitis C virus infection RNA-seq GPL16791 12
X
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GSE68028 Human Immunodeficiency Virus (HIV) The alteration of DNA methylation driven by HIV infection based on a pair of monozygotic twins (MeDIP-chip) MeDIP-chip GPL16284 1
M
L
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GSE68402 Hepatitis B Virus (HBV) Mapping of histone modifications in episomal HBV cccDNA uncovers an unusual chromatin conformation amenable to epigenetic manipulation Chip-seq GPL15520
GPL16791 		26
C
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GSE69877 Merkel Cell Polyomavirus (MCV) MCPyV ST, MAX and the TRRAP complex cooperate to bind to Transcription Start Sites Chip-seq GPL11154
GPL18573 		10
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GSE71450 Human T-cell Lymphotropic Virus type 1 (HTLV1) Genome-wide epigenetic alteration in adult T-cell leukemia cells and HTLV-1-mediated immortalized cells ChIP-on-chip GPL19784 17
L
 Detail
GSE73853 Human cytomegalovirus (HCMV) Transcriptome analysis of diverse cell types infected with human cytomegalovirus [RNA-Seq] RNA-seq GPL11154 13
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GSE78711 Zika virus (ZIKV) Zika Virus Targets Human Cortical Neural Precursors and Attenuates Their Growth RNA-seq GPL15520
GPL18573 		8
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GSE79029 Kaposi's sarcoma-associated herpesvirus (KSHV) KSHV Infection Mimics the Hypoxic Response Based on Next-Generation Sequencing [mRNA-Seq] RNA-seq GPL11154 6
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 Detail
GSE80131 Ebola virus(EBOV) Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation (RNA-Seq) RNA-seq GPL16791 6
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GSE82321 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methyltion of histone H4 arginine 3 on KSHV genome Chip-seq GPL11154 4
C
 Detail
GSE85599 Epstein-Barr(EBV) Whole transcriptome profiling reveals major cell types in the cellular immune response against acute and chronic active Epstein-Barr virus infection Expression array GPL17586 17
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GSE85724 Human Immunodeficiency Virus (HIV) m6A sequencing of HIV viral genomic RNA and infected host cell samples m6A-seq GPL16791 15
L
 Detail
GSE94660 Hepatitis B Virus (HBV) RNA sequencing (RNA-SEQ) of 21 HBV-HCC patients with non-neoplastic liver and tumor tissues RNA-seq GPL16791 42
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GSE94724 Human cytomegalovirus (HCMV) Transcriptome analysis of HCMV infected tissues RNA-seq GPL11154 4
X
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GSE94732 Human T-cell Lymphotropic Virus type 1 (HTLV1) Targeting the HBZ Viral Oncoprotein Transcriptional Network in Adult T-cell leukemia/lymphoma (ChIP-Seq) Chip-seq GPL18573
GPL23049 		24
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GSE96590 Ebola virus(EBOV) Different Temporal Effects of Ebola Virus VP35 and VP24 Proteins on Global Gene Expression in Human Dendritic Cells RNA-seq GPL15433 20
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GSE98057 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (TREx Und 12h 24hInd ChIP-Seq) Chip-seq GPL23366 10
L
 Detail
GSE98087 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (iSLKBac16WT ChIP-Seq) Chip-seq GPL23366 4
L
 Detail
GSE99081 Yellow fever virus (YFV) External RNA Control Consortium (ERCC) spikes in RNA sequencing (RNA-Seq) data normalization: transcriptome analysis of yellow fever virus-infected cells RNA-seq GPL16791 24
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 Detail
GSE99737 Human Immunodeficiency Virus (HIV) Platelet Transcriptome Profiling in HIV and ABCC4 as a Biomarker of Platelet Activity RNA-seq GPL16791 9
X
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TCGA_CESC Human Papillomavirus(HPV) DNA methylation sequencing
RNA-seq 		TCGA 288
X
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M
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TCGA_LIHC_HBV Hepatitis B Virus (HBV) DNA methylation sequencing
RNA-seq 		TCGA 97
X
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 Detail
TCGA_LIHC_HCV Hepatitis C virus (HCV) DNA methylation sequencing
RNA-seq 		TCGA 97
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