HBV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE100400 Hepatitis B Virus (HBV) Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx Chip-seq
RNA-seq
4C_cccDNA
GPL18573
GPL19057
31
X
E
C
L
Detail
GSE110345 Hepatitis B Virus (HBV) Relative abundance of the integrant-derived viral RNAs in infected tissues harvested from chronic HBV carriers RNA-seq GPL16791 4
X
E
Detail
GSE131257 Hepatitis B Virus (HBV) RNA Helicase DDX5, a Negative Regulator of Wnt Activation and Hepatocyte Reprogramming in Hepatitis B Virus-associated Hepatocellular Carcinoma ATAC-seq
RNA-seq
GPL16791 19
X
E
C
L
Detail
GSE173897 Hepatitis B Virus (HBV) Expression of genes associated with poor prognosis from hepatocellular carcinoma are increased in peripheral blood from Hmong with active hepatitis B infection RNA-seq GPL20301 95
X
E
Detail
GSE199850 Hepatitis B Virus (HBV) Intrarenal Single-Cell Sequencing of Hepatitis B Virus-Associated Membranous Nephropathy scRNA-seq GPL20795 1
S
L
Detail
GSE224901 Hepatitis B Virus (HBV) Sera of individuals chronically infected with hepatitis B virus (HBV) contain diverse RNA types produced by HBV replication or derived from integrated HBV DNA RNA-seq GPL24676 21
X
Detail
GSE236281 Hepatitis B Virus (HBV) Comparative Transcriptome Analysis of Peripheral Blood Mononuclear Cells Across Clinical Cohorts of Hepatitis B Virus Induced Hepatocellular Carcinoma and Chronic Asymptomatic Hepatitis B Infection in Nigeria RNA-seq GPL15520 12
X
E
Detail
GSE240450 Hepatitis B Virus (HBV) Hepatitis B virus X protein contributes to hepatocellular carcinoma via upregulation of KIAA1429 methyltransferase and mRNA m6A hypermethylation of HSPG2/Perlecan [MeRIP-Seq] MeRIP-Seq GPL11154 4 Detail
GSE247322 Hepatitis B Virus (HBV) Association of HBsAg levels with differential gene expression in NK, CD8 T, and memory B cells in treated patients with chronic HBV scRNA-seq GPL24676 27
S
L
Detail
GSE250106 Hepatitis B Virus (HBV) Epitranscriptomic cytidine methylation of the Hepatitis B viral RNA encapsidation signal ensure the reverse transcription of viral RNA [PA-m5C-seq] PA-m5C-seq GPL16791
GPL18573
4
L
Detail
GSE250107 Hepatitis B Virus (HBV) Epitranscriptomic cytidine methylation of the Hepatitis B viral RNA encapsidation signal ensure the reverse transcription of viral RNA [PA-m6A-seq] PA-m6A-seq GPL16791 2
L
Detail
GSE252863 Hepatitis B Virus (HBV) Liver-restricted Type I Interferon Signature Precedes Liver Damage in Chronic Hepatitis B Patients Stopping Antiviral Therapy scRNA-seq GPL16791 10
S
Detail
GSE262515 Hepatitis B Virus (HBV) Optimized RNA Interference Therapeutics Combined with Interleukin-2 mRNA for Treating Hepatitis B Virus Infection RNA-seq GPL16791
GPL17021
21
X
E
L
Detail
GSE270130 Hepatitis B Virus (HBV) A nucleosome switch primes Hepatitis B Virus infection [ChIP-Seq] Chip-seq GPL24676 27
C
Detail
GSE270937 Hepatitis B Virus (HBV) Differential methylation patterns in paternally imprinted gene promoter regions in sperm from hepatitis B virus infected individuals DNA methylation sequencing GPL24676 35
M
L
Detail
GSE35462 Hepatitis B Virus (HBV) Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses (ChIP-Seq dataset) Chip-seq GPL11154 4
L
Detail
GSE35465 Hepatitis B Virus (HBV) Genome-wide analysis of histone methylation reveals chromatin state-based regulation of host cellular gene expression induced by hepatitis B viruses Chip-seq
RNA-seq
GPL11154 6
C
L
Detail
GSE64877 Hepatitis B Virus (HBV) Global re-wiring of p53 transcription regulation by the hepatitis B virus X (HBx) protein [ChIP-Seq] Chip-seq GPL9052 2
C
L
Detail
GSE68402 Hepatitis B Virus (HBV) Mapping of histone modifications in episomal HBV cccDNA uncovers an unusual chromatin conformation amenable to epigenetic manipulation Chip-seq GPL15520
GPL16791
26
C
L
Detail
GSE94660 Hepatitis B Virus (HBV) RNA sequencing (RNA-SEQ) of 21 HBV-HCC patients with non-neoplastic liver and tumor tissues RNA-seq GPL16791 42
X
E
L
Detail
TCGA_LIHC_HBV Hepatitis B Virus (HBV) DNA methylation sequencing
RNA-seq
TCGA 97
X
E
M
Detail

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