EBV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE100458 Epstein-Barr(EBV) Gene expression in EBV-positive versus EBV-loss clones derived from endemic Burkitt lymphoma cell lines Expression array GPL23270 14
X
E
L
Detail
GSE102203 Epstein-Barr(EBV) Expression data from EBV+ and EBV- plasmablastic lymphomas Expression array GPL19251 10
X
E
Detail
GSE12452 Epstein-Barr(EBV) mRNA expression profiling of nasopharyngeal carcinoma Expression array GPL570 41
X
E
L
Detail
GSE135644 Epstein-Barr(EBV) Expression data of EBV-positive and EBV-negative subclones of gastric adenocarcinoma cell line AGS Expression array GPL6106 10
X
E
L
Detail
GSE165194 Epstein-Barr(EBV) Defective Epstein-Barr Virus Genomes and Atypical Viral Gene Expression in B-Cell Lines Derived from Multiple Myeloma Patients [I] RNA-seq GPL18573 3
X
E
L
Detail
GSE171494 Epstein-Barr(EBV) Defective Epstein-Barr Virus Genomes and Atypical Viral Gene Expression in B-Cell Lines Derived from Multiple Myeloma Patients [III] Variation GPL18573 2
L
Detail
GSE177046 Epstein-Barr(EBV) Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [RNA-seq] RNA-seq GPL11154 6
X
E
L
Detail
GSE181906 Epstein-Barr(EBV) Competitive Endogenous RNA Landscape in Epstein-Barr Virus Associated Nasopharyngeal Carcinoma RNA-seq GPL24676 24
X
E
Detail
GSE198332 Epstein-Barr(EBV) Repression of DERL3 via DNA methylation by Epstein-Barr virus latent membrane protein 1 in nasopharyngeal carcinoma [methylation data] Methylation profiling (Array) GPL21145 7
M
L
Detail
GSE198334 Epstein-Barr(EBV) Repression of DERL3 via DNA methylation by Epstein-Barr virus latent membrane protein 1 in nasopharyngeal carcinoma [ChIP-seq] Chip-seq GPL18573 4
C
L
Detail
GSE208281 Epstein-Barr(EBV) RNA-seq data of nasopharyngeal carcinoma (NPC) in non-endemic areas RNA-seq GPL18573 50
X
L
Detail
GSE223328 Epstein-Barr(EBV) Plasma cell infiltration and tissue destruction are hallmarks of Epstein-Barr virus infection in periodontitis Expression array GPL21185 16
X
E
L
Detail
GSE225248 Epstein-Barr(EBV) Enhancer infestation drives tumorigenic activation of inactive compartment in Epstein-Barr virus-positive nasopharyngeal carcinoma [ChIP-Seq] Chip-seq GPL18573 12
C
L
Detail
GSE233426 Epstein-Barr(EBV) NPC268 whole-genome bisulfite sequencing (WGBS) Whole-genome bisulfite sequencing (WGBS) GPL24676 1
L
Detail
GSE246059 Epstein-Barr(EBV) Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (ATAC-Seq) ATAC-seq GPL18573
GPL24676
8
C
L
Detail
GSE246060 Epstein-Barr(EBV) Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (ChIP-Seq) Chip-seq GPL24676 26
C
L
Detail
GSE42867 Epstein-Barr(EBV) Gene expression changes in subclones of a Burkitt lymphoma cell line with different patterns of EBV latent infection Expression array GPL570 12
X
E
L
Detail
GSE45919 Epstein-Barr(EBV) Peripheral blood gene expression in human experiencing primary EBV infection (HT12) Expression array GPL10558 24
X
E
L
Detail
GSE58240 Epstein-Barr(EBV) Gene expression profiling of the response to interferon beta in EBV-transformed and primary B cells of patients with multiple sclerosis Expression array GPL10558 32
X
E
L
Detail
GSE85599 Epstein-Barr(EBV) Whole transcriptome profiling reveals major cell types in the cellular immune response against acute and chronic active Epstein-Barr virus infection Expression array GPL17586 17
X
E
L
Detail

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