HCV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE103728 Hepatitis C virus (HCV) High-resolution liver cancer genomic profiling links etiology, epigenetic and mutation signatures [ChIP-Seq] Chip-seq GPL16791 24
C
L
Detail
GSE103730 Hepatitis C virus (HCV) High-resolution liver cancer genomic profiling links etiology, epigenetic and mutation signatures Chip-seq
RNA-seq
GPL16791 42
X
E
L
Detail
GSE126831 Hepatitis C virus (HCV) A temporal proteogenomic atlas of HCV-host interactions unravels cell circuits driving viral and metabolic liver disease RNA-seq GPL18573 63
X
E
L
Detail
GSE211161 Hepatitis C virus (HCV) Effects of HCV JFH-1 on gene expression during 48 hour infection of Primary Human Hepatocytes RNA-seq GPL16791 4
X
E
L
Detail
GSE212871 Hepatitis C virus (HCV) Mechanisms of Restoring T Cell Immunity after Cure of Chronic Viral Infection RNA-seq GPL24676 128
X
E
L
Detail
GSE67848 Hepatitis C virus (HCV) Characterization of Type I Interferon pathway during Hepatic Differentiation of Human Pluripotent Stem Cells and hepatitis C virus infection RNA-seq GPL16791 12
X
E
L
Detail
TCGA_LIHC_HCV Hepatitis C virus (HCV) DNA methylation sequencing
RNA-seq
TCGA 97
X
E
M
Detail

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