HCMV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE136217 Human cytomegalovirus (HCMV) Dual-Sequencing of dendritic cells infected with cytomegalovirus RNA-seq GPL18573
GPL24958 		7
X
E
L
 Detail
GSE152114 Human cytomegalovirus (HCMV) Transcriptome analysis of Human Cytomegalovirus (HCMV) infected nasal turbinate tissues RNA-seq GPL11154 4
X
E
L
 Detail
GSE163707 Human cytomegalovirus (HCMV) Human plasmacytoid dendritic cells mount a distinct antiviral response to virus-infected cells RNA-seq GPL18573
GPL29107 		96
X
E
L
 Detail
GSE164839 Human cytomegalovirus (HCMV) Transcriptome analysis of HCMV infected and mock-infected Kasumi-3 cells at 24 hours post infection RNA-seq GPL18573
GPL24958 		4
X
E
L
 Detail
GSE164841 Human cytomegalovirus (HCMV) Chromatin accessibilty analysis of HCMV infected and mock-infected Kasumi-3 cells at 24 hours post infection ATAC-seq GPL18573
GPL24958 		6
L
 Detail
GSE164842 Human cytomegalovirus (HCMV) Pol2 and H3K27Ac and H3K27me3 occupancy of the viral and host genomes in HCMV infected Kasumi-3 cells at 24 hpi Chip-seq GPL20301
GPL29603 		21
L
 Detail
GSE164843 Human cytomegalovirus (HCMV) Comparison of HCMV nascent and steady state transcriptomes expresssed in the Kasumi-3 latency model at early times post-infection RNA-seq GPL18573
GPL24958 		10
X
E
L
 Detail
GSE164844 Human cytomegalovirus (HCMV) Pol2 and H3K27Ac and H3K27me3 occupancy of the viral genome in HCMV infected Kasumi-3 cells at early times post infection Chip-seq GPL29601
GPL29602 		24
L
 Detail
GSE164845 Human cytomegalovirus (HCMV) Pol2 occupancy of the viral and host genomes in HCMV infected Kasumi-3 cells at 24 hpi Chip-seq GPL18573
GPL20301
GPL24958 		8
L
 Detail
GSE164861 Human cytomegalovirus (HCMV) Epigenetic reprogramming of host and viral genes by Human Cytomegalovirus infection in Kasumi-3 myeloid progenitor cells at early times post-infection Chip-seq
RNA-seq
ATAC-seq 		GPL18573
GPL20301
GPL24958
GPL29601
GPL29602
GPL29603 		79
C
L
 Detail
GSE168598 Human cytomegalovirus (HCMV) Transcriptomics of Kidney Transplant Recipients after Cytomegalovirus DNAemia RNA-seq GPL21290 154
X
E
L
 Detail
GSE169634 Human cytomegalovirus (HCMV) HCMV infected Human Fibroblasts UL84 IE2 ChIPSeq Chip-seq GPL18573 12
C
L
 Detail
GSE171518 Human cytomegalovirus (HCMV) Role of the HCMV immediate early proteins in controlling the HCMV and cellular epigenomes Chip-seq GPL29977 16
C
L
 Detail
GSE182788 Human cytomegalovirus (HCMV) Transcriptomic analysis of neural-induced SHED cells with/without HCMV infection RNA-seq GPL11154 4
X
E
L
 Detail
GSE185618 Human cytomegalovirus (HCMV) Differences in RNA polymerase II complexes and their interactions with surrounding chromatin on human and cytomegalovirus genomes [ChIP-seq] Chip-seq GPL20301
GPL24676 		25
C
L
 Detail
GSE193759 Human cytomegalovirus (HCMV) Downregulation of Neurodevelopmental Gene Expression in iPSC-Derived Cerebral Organoids Upon Infection by Human Cytomegalovirus RNA-seq GPL11154
GPL24259 		12
X
E
L
 Detail
GSE217832 Human cytomegalovirus (HCMV) Human cytomegalovirus dysregulates neurodevelopmental pathways in cerebral organoids RNA-seq GPL18573 8
X
E
L
 Detail
GSE245832 Human cytomegalovirus (HCMV) DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells Whole-genome bisulfite sequencing (WGBS) GPL24676 14
L
 Detail
GSE248772 Human cytomegalovirus (HCMV) Transcriptome profiling of human cytomegalovirus-infected trophoblasts RNA-seq GPL24676 84
X
E
L
 Detail
GSE253562 Human cytomegalovirus (HCMV) DNA methylation profiling of lung transplant recipients Targeted-bisulfite sequencing (TBS-seq) GPL24676 92
M
L
 Detail
GSE254734 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [ATAC-seq] ATAC-seq GPL24676 8 Detail
GSE254735 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [RNA-Seq] RNA-seq GPL24676 4
X
E
 Detail
GSE254736 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [ChIP-seq] Chip-seq GPL24676 12 Detail
GSE254737 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [HiChIP] HiChIP GPL24676 6 Detail
GSE254741 Human cytomegalovirus (HCMV) Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity ATAC-seq
ChIP-seq
HiChIP
RNA-seq 		GPL24676 30
C
 Detail
GSE280380 Kaposi's sarcoma-associated herpesvirus (KSHV);Human cytomegalovirus (HCMV) DNA virus infections shape transposable element activity in vitro and in vivo (HCMV,KSHV,DUX4) RNA-seq GPL24676 54
X
E
 Detail
GSE53271 Human cytomegalovirus (HCMV) Release of Human Cytomegalovirus from latency by a KAP1/TRIM28 phosphorylation switch Chip-seq GPL11154 2
C
L
 Detail
GSE73853 Human cytomegalovirus (HCMV) Transcriptome analysis of diverse cell types infected with human cytomegalovirus [RNA-Seq] RNA-seq GPL11154 13
X
E
L
 Detail
GSE94724 Human cytomegalovirus (HCMV) Transcriptome analysis of HCMV infected tissues RNA-seq GPL11154 4
X
E
L
 Detail

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