HPV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE138080 Human Papillomavirus(HPV) Identification of deregulated pathways, key regulators, and novel miRNA-mRNA interactions in HPV-mediated transformation Expression array GPL4133 35
X
E
L
 Detail
GSE139324 Human Papillomavirus(HPV) Immune landscape of viral- and carcinogen-drived head and neck cancer scRNA-seq GPL18573 63
S
L
 Detail
GSE140662 Human Papillomavirus(HPV) Expression data of keratinocytes from condyloma acuminata and skin tissues Expression array GPL17586 8
X
E
L
 Detail
GSE143026 Human Papillomavirus(HPV) Viral integration transforms chromatin to drive oncogenesis ATAC-seq
Chip-seq
RNA-seq 		GPL16791 30
X
C
 Detail
GSE164690 Human Papillomavirus(HPV) Investigating Immune and Non-Immune Cell Interactions in Head and Neck Tumors by Single-Cell RNA Sequencing scRNA-seq GPL18573 51
S
L
 Detail
GSE165883 Human Papillomavirus(HPV) Recurrent human papillomavirus-related head and neck cancer undergoes metabolic re-programming and is driven by oxidative phosphorylation RNA-seq GPL18573 20
X
E
 Detail
GSE169622 Human Papillomavirus(HPV) Epigenome analysis of normal and cervical cancer with human papilloma virus type 16 or 18 positive Methylation profiling (Array) GPL21145 9
M
L
 Detail
GSE181805 Human Papillomavirus(HPV) Comparison between HPV+ / p16+ versus the HPV-/p16- from HNSCC patients Expression array GPL17586 25
X
E
L
 Detail
GSE183048 Human Papillomavirus(HPV) Recurrent Integration of Human Papillomavirus Genomes at Transcriptional Regulatory Hubs Chip-seq GPL20301 24
C
L
 Detail
GSE196215 Human Papillomavirus(HPV) Human papillomavirus 42 is an oncogenic driver in Digital Papillary Adenocarcinoma [tumors] RNA-seq GPL24676 8
X
L
 Detail
GSE197461 Human Papillomavirus(HPV) Decipher heterogeneity of cervical squamous cell carcinoma and adenocarcinoma with different HPV status: combining scRNA and TCR-seq with 3D organoid scRNA-seq GPL24676 16
S
L
 Detail
GSE199029 Human Papillomavirus(HPV) Integrative genome analysis reveals low T cell infiltration as the primary feature of tobacco use in HPV(+) oropharyngeal cancer Variation
RNA-seq 		GPL32069 44
E
L
 Detail
GSE226620 Human Papillomavirus(HPV) CD161 expression of TRM cells counteracts the HPV-associated clinical benefit in oropharyngeal cancer immunotherapy scRNA-seq GPL20795 30
S
L
 Detail
GSE40774 Human Papillomavirus(HPV) Integrative genomic analysis identifies clinically relevant subtypes of head and neck cancer characterized by hypoxia, T-cell infiltration, and EMT Expression array GPL13497 134
X
E
L
 Detail
GSE51993 Human Papillomavirus(HPV) microRNA differential regulations gradually mediate genomic instability during cervical intraepithelial neoplasia progression Expression array GPL8179
GPL10558 		48
X
E
 Detail
GSE55542 Human Papillomavirus(HPV) Gene expression profiling of HPV-active, HPV-inactive and HPV-negative oropharyngeal squamous cell carcinomas Expression array GPL17077 36
X
E
L
 Detail
GSE55550 Human Papillomavirus(HPV) Gene expression profiles of oral and oropharyngeal cancers from European American and African American patients Expression array GPL17077 155
X
E
L
 Detail
GSE65858 Human Papillomavirus(HPV) Gene expression patterns and TP53 mutations are associated with HPV RNA status, lymph node metastasis, and survival in head and neck cancer Expression array GPL10558 270
X
E
L
 Detail
TCGA_CESC Human Papillomavirus(HPV) DNA methylation sequencing
RNA-seq 		TCGA 288
X
E
M
 Detail

Copyright © 2025.Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.