HPV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE143026 Human Papillomavirus(HPV) Viral integration transforms chromatin to drive oncogenesis ATAC-seq
Chip-seq
RNA-seq
GPL16791 30
X
C
Detail
GSE169622 Human Papillomavirus(HPV) Epigenome analysis of normal and cervical cancer with human papilloma virus type 16 or 18 positive Methylation profiling (Array) GPL21145 9
M
L
Detail
GSE183048 Human Papillomavirus(HPV) Recurrent Integration of Human Papillomavirus Genomes at Transcriptional Regulatory Hubs Chip-seq GPL20301 24
C
L
Detail
TCGA_CESC Human Papillomavirus(HPV) DNA methylation sequencing
RNA-seq
TCGA 288
X
E
M
Detail

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