KSHV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE100044 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (H4R3me2s ChIP-Seq) Chip-seq GPL23366 8
L
 Detail
GSE104621 Kaposi's sarcoma-associated herpesvirus (KSHV) N6-methyladenosine modification in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection [MeRIP-seq] MeRIP-seq GPL16791 8
L
 Detail
GSE132777 Kaposi's sarcoma-associated herpesvirus (KSHV) ChIP-Seq of IRF4, BATF, and vIRF3 in BC-3 cells Chip-seq GPL11154
GPL18573 		10
C
L
 Detail
GSE135740 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide maps of chromatin modifications in KSHV-transformed primary effusion lymphoma cell lines Chip-seq GPL11154
GPL18573 		10
C
L
 Detail
GSE147063 Kaposi's sarcoma-associated herpesvirus (KSHV) Global epigenomic analysis of primary effusion lymphoma identifies MYC super-enhancers and enhancer RNAs associated with KSHV infection Chip-seq
GRO-seq
4C-seq 		GPL18573
GPL27467 		10
C
 Detail
GSE158935 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide transcriptome analysis of KSHV long-term-infected endothelial (LTC) and parental uninfected TIVE cells [RNA-seq] RNA-seq GPL16791
GPL24676 		6
X
E
L
 Detail
GSE19905 Kaposi's sarcoma-associated herpesvirus (KSHV) Global analysis of DNA methylation patterns on the latent KSHV episome in PEL and de novo infected endothelial cells MeDIP GPL9942 8
L
 Detail
GSE19906 Kaposi's sarcoma-associated herpesvirus (KSHV) Global analysis of histone modification patterns on the latent KSHV episome ChIP-on-chip GPL9942 12
L
 Detail
GSE202670 Kaposi's sarcoma-associated herpesvirus (KSHV) Epigenetic reprogramming of Kaposi’s sarcoma-associated herpesvirus during hypoxic reactivation Chip-seq GPL9052 14
C
L
 Detail
GSE207589 Kaposi's sarcoma-associated herpesvirus (KSHV) KSHV infection of Endothelial Colony Forming Cells RNA-seq GPL11154 12
X
E
L
 Detail
GSE232843 Kaposi's sarcoma-associated herpesvirus (KSHV) Prolonged Kaposi's Sarcoma-associated Herpesvirus vIL-6 Exposure Enhances Inflammatory Responses by Epigenetic Reprogramming (RNA-seq) RNA-seq GPL24676 12
X
E
L
 Detail
GSE241095 Kaposi's sarcoma-associated herpesvirus (KSHV) Bulk RNA-sequencing of normal and Kaposi sarcoma tissues from skin and gastrointestinal tract RNA-seq GPL20301
GPL24676 		44
X
E
L
 Detail
GSE260925 Kaposi's sarcoma-associated herpesvirus (KSHV) Unveiling the Role of KSHV-Infected Human Mesenchymal Stem Cells in Kaposi's Sarcoma Initiation RNA-seq GPL24676 24
X
E
L
 Detail
GSE280006 Kaposi's sarcoma-associated herpesvirus (KSHV) BiP/GRP78 is a pro-viral factor for diverse dsDNA viruses that promotes the survival and proliferation of cells upon KSHV infection RNA-seq GPL21697 14
X
E
L
 Detail
GSE280380 Kaposi's sarcoma-associated herpesvirus (KSHV);Human cytomegalovirus (HCMV) DNA virus infections shape transposable element activity in vitro and in vivo (HCMV,KSHV,DUX4) RNA-seq GPL24676 54
X
E
 Detail
GSE38411 Kaposi's sarcoma-associated herpesvirus (KSHV) Cohesins Repress KSHV Immediate Early Gene Transcription During Latency Chip-seq GPL9115
GPL15642 		5
C
L
 Detail
GSE52421 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide ChIP sequence analysis of KSHV-infected primary effusion lymphoma (PEL) cell line BCBL-1 and human umbilical vein endothelial TIVE-LTC cells Chip-seq GPL10999 18
C
L
 Detail
GSE56144 Kaposi's sarcoma-associated herpesvirus (KSHV) Site-Specific Association with Host and Viral Chromatin by KSHV LANA and its Reversal during Lytic Reactivation Chip-seq
RNA-seq 		GPL9115
GPL16791 		33
C
L
 Detail
GSE79029 Kaposi's sarcoma-associated herpesvirus (KSHV) KSHV Infection Mimics the Hypoxic Response Based on Next-Generation Sequencing [mRNA-Seq] RNA-seq GPL11154 6
X
E
L
 Detail
GSE82321 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methyltion of histone H4 arginine 3 on KSHV genome Chip-seq GPL11154 4
C
 Detail
GSE98057 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (TREx Und 12h 24hInd ChIP-Seq) Chip-seq GPL23366 10
L
 Detail
GSE98087 Kaposi's sarcoma-associated herpesvirus (KSHV) Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (iSLKBac16WT ChIP-Seq) Chip-seq GPL23366 4
L
 Detail

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