KSHV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE147063 Kaposi's sarcoma-associated herpesvirus (KSHV) Global epigenomic analysis of primary effusion lymphoma identifies MYC super-enhancers and enhancer RNAs associated with KSHV infection Chip-seq
GRO-seq
4C-seq
GPL18573
GPL27467
10
C
Detail
GSE158935 Kaposi's sarcoma-associated herpesvirus (KSHV) Genome-wide transcriptome analysis of KSHV long-term-infected endothelial (LTC) and parental uninfected TIVE cells [RNA-seq] RNA-seq GPL16791
GPL24676
6
X
E
L
Detail
GSE207589 Kaposi's sarcoma-associated herpesvirus (KSHV) KSHV infection of Endothelial Colony Forming Cells RNA-seq GPL11154 12
X
E
L
Detail
GSE232843 Kaposi's sarcoma-associated herpesvirus (KSHV) Prolonged Kaposi's Sarcoma-associated Herpesvirus vIL-6 Exposure Enhances Inflammatory Responses by Epigenetic Reprogramming (RNA-seq) RNA-seq GPL24676 12
X
E
L
Detail
GSE241095 Kaposi's sarcoma-associated herpesvirus (KSHV) Bulk RNA-sequencing of normal and Kaposi sarcoma tissues from skin and gastrointestinal tract RNA-seq GPL20301
GPL24676
44
X
E
L
Detail
GSE260925 Kaposi's sarcoma-associated herpesvirus (KSHV) Unveiling the Role of KSHV-Infected Human Mesenchymal Stem Cells in Kaposi's Sarcoma Initiation RNA-seq GPL24676 24
X
E
L
Detail
GSE280006 Kaposi's sarcoma-associated herpesvirus (KSHV) BiP/GRP78 is a pro-viral factor for diverse dsDNA viruses that promotes the survival and proliferation of cells upon KSHV infection RNA-seq GPL21697 14
X
E
L
Detail
GSE280380 Kaposi's sarcoma-associated herpesvirus (KSHV);Human cytomegalovirus (HCMV) DNA virus infections shape transposable element activity in vitro and in vivo (HCMV,KSHV,DUX4) RNA-seq GPL24676 54
X
E
Detail
GSE56144 Kaposi's sarcoma-associated herpesvirus (KSHV) Site-Specific Association with Host and Viral Chromatin by KSHV LANA and its Reversal during Lytic Reactivation Chip-seq
RNA-seq
GPL9115
GPL16791
33
C
L
Detail
GSE79029 Kaposi's sarcoma-associated herpesvirus (KSHV) KSHV Infection Mimics the Hypoxic Response Based on Next-Generation Sequencing [mRNA-Seq] RNA-seq GPL11154 6
X
E
L
Detail

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