HIV-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE100266 Human Immunodeficiency Virus (HIV) The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin Remodeling Complexes ATAC-seq
Chip-seq
RNA-seq 		GPL16791 32
X
E
C
L
 Detail
GSE100376 Human Immunodeficiency Virus (HIV) HIV-1 infection of human monocyte-derived dendritic cells with and without the integrase inhibitor, Raltegravir (ATAC-Seq) ATAC-seq GPL18573 24
C
L
 Detail
GSE125686 Human Immunodeficiency Virus (HIV) Transcriptomic profiling of peripheral blood NK cells of chronic HBV, HCV and HIV patients RNA-seq GPL11154
GPL16791
GPL18573 		62
X
E
L
 Detail
GSE128121 Human Immunodeficiency Virus (HIV) Pharmacological Inhibition of PPARĪ³ Reverses HIV Latency but Prevents Viral Production/Infectivity while Boosting Th17 Functions RNA-seq GPL20301 16
X
E
L
 Detail
GSE144329 Human Immunodeficiency Virus (HIV) A unique viral reservoir landscape associated with durable natural control of HIV-1 infection [ATAC-seq] ATAC-seq GPL21697 96
C
L
 Detail
GSE144332 Human Immunodeficiency Virus (HIV) A unique viral reservoir landscape associated with durable natural control of HIV-1 infection [RNA-seq] RNA-seq GPL21697 75
X
E
L
 Detail
GSE148796 Human Immunodeficiency Virus (HIV) Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in humanized mice by scRNA-seq scRNA-seq GPL18573 4
S
L
 Detail
GSE150390 Human Immunodeficiency Virus (HIV) Complementation can maintain a quasispecies of drug sensitive and resistant HIV Variation GPL23868 207 Detail
GSE157829 Human Immunodeficiency Virus (HIV) An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Single-Cell Transcriptomics scRNA-seq GPL16791 7
S
L
 Detail
GSE162914 Human Immunodeficiency Virus (HIV) Transcriptomic biomarker pathways associated with death in HIV-infected patients with cryptococcal meningitis RNA-seq GPL16791 211
X
E
L
 Detail
GSE164264 Human Immunodeficiency Virus (HIV) RNA sequencing of Chlamydia trachomatis-stimulated HIV-1-infected CD4 T cells RNA-seq GPL23227 6
X
E
 Detail
GSE165132 Human Immunodeficiency Virus (HIV) HIV-exposed seronegative sex workers express high levels of regulatory T cells, low levels of T cell activation and an intact ectocervical tissue microenvironment RNA-seq GPL21697 56
X
E
L
 Detail
GSE165703 Human Immunodeficiency Virus (HIV) Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (ATAC-Seq) ATAC-seq GPL20301 82
C
L
 Detail
GSE165705 Human Immunodeficiency Virus (HIV) Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (ChIP-Seq) Chip-seq GPL24676 30
C
L
 Detail
GSE165708 Human Immunodeficiency Virus (HIV) Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (RNA-Seq) RNA-seq GPL20301 100
X
E
L
 Detail
GSE167211 Human Immunodeficiency Virus (HIV) Mechanisms of Th17 and Treg cell dysregulation in oral mucosal inflammation during HIV disease RNA-seq GPL11154 1
X
E
L
 Detail
GSE169310 Human Immunodeficiency Virus (HIV) H3K4me3 histone ChIPseq Analysis Reveals Molecular Mechanisms Responsible for Neutrophil dysfunction in HIV-infected individuals Chip-seq GPL21697 8
L
 Detail
GSE187515 Human Immunodeficiency Virus (HIV) Single-cell multiomics of CD4+ T cell clones in HIV-1 infected individuals scRNA-seq GPL15520
GPL20301
GPL24676 		104
S
L
 Detail
GSE198339 Human Immunodeficiency Virus (HIV) Single-cell RNA sequencing of peripheral blood mononuclear cells reveals immune signaling dysregulations in people living with HIV and atherosclerosis scRNA-seq GPL24676 8
S
L
 Detail
GSE198809 Human Immunodeficiency Virus (HIV) Changes in subcutaneous white adipose tissue cellular composition and molecular programs underlie glucose intolerance in persons with HIV scRNA-seq GPL24676 46
S
L
 Detail
GSE202410 Human Immunodeficiency Virus (HIV) Single cell transcriptomics reveals HIV viral transcription and compartmentalized immune perturbations in the CNS of people with HIV despite antiretroviral treatment scRNA-seq GPL20301 24
S
L
 Detail
GSE205204 Human Immunodeficiency Virus (HIV) Comprehensive RNA-Seq Reveals Molecular Changes in Kidney Malignancy Among People Living with HIV RNA-seq GPL24676 14
X
E
L
 Detail
GSE205320 Human Immunodeficiency Virus (HIV) Combined protein and transcript single cell RNA sequencing in human peripheral blood mononuclear cells scRNA-seq GPL24676 5
S
L
 Detail
GSE211651 Human Immunodeficiency Virus (HIV) Enhancing HIV-1 latency reversal through regulating the elongating RNA Pol II pause-release by a small-molecule disruptor of PAF1C Chip-seq
RNA-seq
PRO-seq 		GPL18573
GPL24676 		39
X
E
C
L
 Detail
GSE220859 Human Immunodeficiency Virus (HIV) HIV-1 integration in microglia (ChIP-seq of CTCF-KD/-NT) Chip-seq GPL24676 11
C
L
 Detail
GSE221685 Human Immunodeficiency Virus (HIV) The latent HIV reservoir in the brain of people with HIV under antiretroviral therapy (ChIP-Seq) Chip-seq GPL24676 6 Detail
GSE221686 Human Immunodeficiency Virus (HIV) The latent HIV reservoir in the brain of people with HIV under antiretroviral therapy (scATAC-Seq) scATAC-seq GPL24676 3 Detail
GSE221688 Human Immunodeficiency Virus (HIV) The latent HIV reservoir in the brain of people with HIV under antiretroviral therapy Chip-seq
scATAC-Seq
scRNA-Seq 		GPL24676 12
C
 Detail
GSE228078 Human Immunodeficiency Virus (HIV) Single cell transcriptomic atlas of human plasmacytoid dendritic cells reveals a distinct cytotoxic-like subset in HIV-1 infected individuals scRNA-seq GPL24676 12
S
L
 Detail
GSE233747 Human Immunodeficiency Virus (HIV) scRNA-seq analysis of human peripheral blood mononuclear cells collected at the acute HIV-1 infection timepoint scRNA-seq GPL24676 40
S
L
 Detail
GSE246082 Human Immunodeficiency Virus (HIV) Dysregulated neuroimmune interactions and sustained type I interferon signaling after human immunodeficiency virus type 1 infection of human iPSC derived microglia and cerebral organoids RNA-seq GPL20301 6
X
E
L
 Detail
GSE262621 Human Immunodeficiency Virus (HIV) Gene expression profiling of HIV-associated diffuse large B-cell lymphomas from Malawi RNA-seq GPL24676 70
X
E
L
 Detail
GSE279982 Human Immunodeficiency Virus (HIV) DNA Methylation Biomarkers for Cervical Cancer Risk Prediction in HIV-Positive Nigerian Women Methylation profiling (Array) GPL21145 576
M
 Detail
GSE30736 Human Immunodeficiency Virus (HIV) Genome-wide binding map of the HIV Tat protein to the human genome (ChIP-chip) Chip-seq
ChIP on chip 		GPL7032 1
L
 Detail
GSE30738 Human Immunodeficiency Virus (HIV) Genome-wide binding map of the HIV Tat protein to the human genome (ChIP-Seq) Chip-seq GPL9115 2
C
L
 Detail
GSE68028 Human Immunodeficiency Virus (HIV) The alteration of DNA methylation driven by HIV infection based on a pair of monozygotic twins (MeDIP-chip) MeDIP-chip GPL16284 1
M
L
 Detail
GSE85724 Human Immunodeficiency Virus (HIV) m6A sequencing of HIV viral genomic RNA and infected host cell samples m6A-seq GPL16791 15
L
 Detail
GSE99737 Human Immunodeficiency Virus (HIV) Platelet Transcriptome Profiling in HIV and ABCC4 as a Biomarker of Platelet Activity RNA-seq GPL16791 9
X
E
L
 Detail

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