HSV1-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE123782 Herpes simplex virus type 1 (HSV1) Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program RNA-seq
scRNA-seq 		GPL18573
GPL20301 		39
X
E
L
 Detail
GSE124801 Herpes simplex virus type 1 (HSV1) The epigenetic landscapes of histone modifications on HSV-1 genome in human THP-1 cells [ChIP-seq] Chip-seq GPL26016 60
L
 Detail
GSE124802 Herpes simplex virus type 1 (HSV1) The epigenetic landscapes of histone modifications on HSV-1 genome in human THP-1 cells [RNA-seq] RNA-seq GPL26016 16
X
E
L
 Detail
GSE163952 Herpes simplex virus type 1 (HSV1) Neurodegeneration in herpes simplex virus 1 infected human brain organoids RNA-seq
scRNA-seq 		GPL18573
GPL20301
GPL26180
GPL26236
GPL29543
GPL29544 		40
X
E
S
L
 Detail
GSE185234 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (ATAC-seq I) ATAC-seq GPL18573 18
L
 Detail
GSE185235 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (ATAC-seq I) ATAC-seq GPL18573 22
L
 Detail
GSE185236 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq II) Omni-ATAC-seq GPL18573 24
L
 Detail
GSE185238 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq I) Omni-ATAC-seq GPL18573 14
L
 Detail
GSE185240 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq III) Omni-ATAC-seq GPL18573 6
L
 Detail
GSE185241 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes ATAC-seq
Omni-ATAC-seq
RNA-seq
Chip-seq 		GPL18573
GPL28038 		160
C
L
 Detail
GSE185246 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (ChIPmentation) Chip-seq GPL18573
GPL28038 		40
L
 Detail
GSE208077 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (OMNI-ATAC-seq IV) Omni-ATAC-seq GPL18573 12
L
 Detail
GSE208078 Herpes simplex virus type 1 (HSV1) The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (RNA-seq II) RNA-seq GPL18573 24
X
E
L
 Detail
GSE218199 Herpes simplex virus type 1 (HSV1) Comparative analysis of innate immune responses to viral infection among animals scRNA-seq GPL24676
GPL27943
GPL30573
GPL30616 		16
S
L
 Detail
GSE228495 Herpes simplex virus type 1 (HSV1) Encephalitis and poor neuronal death-mediated control of herpes simplex virus in human inherited RIPK3 deficiency RNA-seq GPL24676 14
X
E
L
 Detail
GSE242170 Herpes simplex virus type 1 (HSV1) IFN-λ signaling protects mice from severe HSV-1 skin disease II RNA-seq GPL24676 21
X
E
L
 Detail
GSE249663 Herpes simplex virus type 1 (HSV1) The roles of nuclear orphan receptor NR2F6 in anti-viral innate immunity [ChIP-seq] Chip-seq GPL24676 8 Detail
GSE249665 Herpes simplex virus type 1 (HSV1) The roles of nuclear orphan receptor NR2F6 in anti-viral innate immunity Chip-seq
RNA-seq 		GPL24676 18
X
E
C
 Detail
GSE272361 Herpes simplex virus type 1 (HSV1) Herpes simplex virus 1 infection of human brain organoids and pancreatic stem cell-islets drives transcripts associated with Alzheimer’s disease and autoimmune diseases RNA-seq GPL24676 9
X
E
L
 Detail
GSE281836 Herpes simplex virus type 1 (HSV1) Multifaceted roles of RAP80 during the Herpes simplex virus 1 life cycle Chip-seq GPL24676 2
C
 Detail
GSE285166 Herpes simplex virus type 1 (HSV1) Bisulfite sequencing of methylation changes in the D4Z4 region caused by HSV-1 Bisulfite-seq GPL24676 2 Detail
GSE285167 Herpes simplex virus type 1 (HSV1) Chromatin immunoprecipitation sequencing of transcription factor DUX4 Chip-seq GPL24676 4
C
 Detail

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