HPV VIS Detail Information

> This page shows VIS [5009981] detail information, including site information (chromosome, GRCh38 location, disease, sample, etc) and literature information.

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Literature Information

PubMed PMID	30794288
Year	2019 Jul 6;40(6):749-764
Journal	Carcinogenesis
Title	Microbiome signatures in prostate cancer.
Author	Banerjee S,Alwine JC,Wei Z,Tian T,Shih N,Sperling C,Guzzo T,Feldman MD,Robertson ES
Evidence	We have established a microbiome signature for prostate cancer using an array-based metagenomic and capture-sequencing approach. A diverse microbiome signature (viral, bacterial, fungal and parasitic) was observed in the prostate cancer samples compared with benign prostate hyperplasia controls. Hierarchical clustering analysis identified three distinct prostate cancer-specific microbiome signatures. The three signatures correlated with different grades, stages and scores of the cancer. Thus, microbiome signature analysis potentially provides clinical diagnosis and outcome predictions. The array data were validated by PCR and targeted next-generation sequencing (NGS). Specific NGS data suggested that certain viral genomic sequences were inserted into the host somatic chromosomes of the prostate cancer samples. A randomly selected group of these was validated by direct PCR and sequencing. In addition, PCR validation of Helicobacter showed that Helicobacter cagA sequences integrated within specific chromosomes of prostate tumor cells. The viral and Helicobacter integrations are predicted to affect the expression of several cellular genes associated with oncogenic processes.