HTLV1 VIS-Cistrome Factor Overlap in each human chromosome

This page provides a heatmap of three VIS-Factors overlap counts by chromosome to help users have a better understanding of the distribution of VIS-Factors overlap in the human genome.

HTLV1 Overall Heatmap

CA: chromatin accessibility TFBS: transcription factor binding site HM: histone modification

Browse data distribution by Chromosome or Factor

*Please select the Chromosome or Factor you are interested in, the page will be automatically redirected.

Chromosome:

Cistrome Factor:

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

Show VIS with one point

Rank of Overlapped Records (S)	DVID	Location	HM (S)	TFBS (S)	CA (S)	Sum (S)	HM (B)	TFBS (B)	CA (B)	Sum (B)	Case/Length	Detail
1	6033918	52033578, 52033653	4486	1929	1073	7488	4522	2460	1276	8258	Case 2 \| 75	View
2	6033637	244863692, 244864138	2753	478	261	3492	3251	717	348	4316	Case 2 \| 446	View
3	6033629	66332505, 66332691	1168	443	269	1880	1225	444	273	1942	Case 2 \| 186	View
4	6033622	629670, 630597	93	128	761	982	2350	7942	2090	12382	Case 2 \| 927	View
5	6033624	632334, 634896	161	148	118	427	3940	9486	2116	15542	Case 2 \| 2562	View
6	6034196	7341672, 7341748	102	90	208	400	107	92	231	430	Case 2 \| 76	View
7	6033927	172955776, 172955846	58	69	109	236	66	69	109	244	Case 2 \| 70	View
8	6033934	236465556, 236465632	220	6	6	232	245	12	9	266	Case 2 \| 76	View
9	6033566	633575, 634889	16	27	177	220	3854	9474	2113	15441	Case 2 \| 1314	View
10	6034209	109267009, 109267085	16	66	109	191	26	85	166	277	Case 2 \| 76	View
11	6033924	121743483, 121743557	120	55	7	182	120	56	7	183	Case 2 \| 74	View
12	6034215	156165786, 156165861	166	4		170	212	4		216	Case 2 \| 75	View
13	6034203	94847890, 94847966	19	37	96	152	22	37	96	155	Case 2 \| 76	View
14	6033635	150575072, 150575614	92	8		100	154	12	3	169	Case 2 \| 542	View
15	6034221	235759595, 235759671	37	22	25	84	37	22	25	84	Case 2 \| 76	View
16	6033636	241115099, 241115419	29	12	38	79	35	13	39	87	Case 2 \| 320	View
17	6033623	631081, 632028	12	20	39	71	184	534	221	939	Case 2 \| 947	View
18	6033565	631078, 631980	12	20	38	70	181	529	199	909	Case 2 \| 902	View
19	6033567	90400503, 90401054	19	22	24	65	34	42	26	102	Case 2 \| 551	View
20	6033929	209556643, 209556719	34	19	8	61	34	21	8	63	Case 2 \| 76	View
21	6034211	111290948, 111291024	10	31	16	57	11	31	16	58	Case 2 \| 76	View
22	6033925	156048630, 156048705	53	2		55	54	12		66	Case 2 \| 75	View
23	6033914	15910653, 15910729	30	1		31	30	1		31	Case 2 \| 76	View
24	6033625	31263365, 31263818	25			25	78	84	9	171	Case 2 \| 453	View
25	6033928	178255910, 178255965		25		25		25		25	Case 2 \| 55	View
26	6034201	51078074, 51078119	18	3		21	25	5		30	Case 2 \| 45	View
27	6033631	66355525, 66355794	20		1	21	31	1	2	34	Case 2 \| 269	View
28	6033628	66325715, 66325930	4	2	15	21	8	5	16	29	Case 2 \| 215	View
29	6034206	103075183, 103075259	12	1	8	21	14	1	12	27	Case 2 \| 76	View
30	6034205	98063899, 98063974	18	1		19	18	2		20	Case 2 \| 75	View
31	6033633	66363181, 66363525	19			19	68	13	1	82	Case 2 \| 344	View
32	6033932	221909206, 221909282	12		6	18	12		7	19	Case 2 \| 76	View
33	6033568	90419998, 90420065	10	2	6	18	15	6	18	39	Case 2 \| 67	View
34	6033933	225996891, 225996967	16	1		17	17	1		18	Case 2 \| 76	View
35	6034217	194719085, 194719158	8	4		12	8	4		12	Case 2 \| 73	View
36	6033926	161848535, 161848599	7	4	1	12	14	15	2	31	Case 2 \| 64	View
37	6033922	106238722, 106238798	6	5		11	6	11		17	Case 2 \| 76	View
38	6034197	8338598, 8338636	9	1		10	9	2		11	Case 2 \| 38	View
39	6034220	215609556, 215609632	10			10	10			10	Case 2 \| 76	View
40	6034210	111010813, 111010882	6	4		10	6	4		10	Case 2 \| 69	View
41	6034219	205614230, 205614306	4	3	3	10	4	3	3	10	Case 2 \| 76	View
42	6033569	208635434, 208636214	10			10	59	23	3	85	Case 2 \| 780	View
43	6033632	66361613, 66361769	9			9	12			12	Case 2 \| 156	View
44	6034212	114701878, 114701954	8	1		9	9	1		10	Case 2 \| 76	View
45	6034204	96219318, 96219394	3	4	2	9	4	4	2	10	Case 2 \| 76	View
46	6034218	202778869, 202778945	7	2		9	7	2		9	Case 2 \| 76	View
47	6033634	91387230, 91387560	6	2		8	415	13	33	461	Case 2 \| 330	View
48	6034216	165049390, 165049466	7			7	7			7	Case 2 \| 76	View
49	6034198	21923051, 21923127	2		4	6	2		4	6	Case 2 \| 76	View
50	6033917	36663133, 36663209	1	5		6	1	5		6	Case 2 \| 76	View
51	6034202	60518408, 60518484	2	3		5	2	3	1	6	Case 2 \| 76	View
52	6033626	66318859, 66319325		5		5	2	17		19	Case 2 \| 466	View
53	6034200	46214787, 46214863	3	1		4	4	1		5	Case 2 \| 76	View
54	6033931	220148754, 220148829		3		3		4		4	Case 2 \| 75	View
55	6034213	117229271, 117229345		3		3		3		3	Case 2 \| 74	View
56	6033921	101925040, 101925116	1	1	1	3	1	1	1	3	Case 2 \| 76	View
57	6033919	55973784, 55973860	1	1		2	1	1		2	Case 2 \| 76	View
58	6033630	66340728, 66341967	2			2	16	17	46	79	Case 2 \| 1239	View
59	6033915	26868538, 26868614	2			2	2			2	Case 2 \| 76	View
60	6033916	34130928, 34131003	1		1	2	1		1	2	Case 2 \| 75	View
61	6033936	244605655, 244605696	1	1		2	1	2		3	Case 2 \| 41	View
62	6033923	107171071, 107171147		2		2	1	2		3	Case 2 \| 76	View
63	6033930	215832802, 215832878	2			2	2	1		3	Case 2 \| 76	View
64	6033920	72288333, 72288409		2		2		3		3	Case 2 \| 76	View
65	6034208	105991657, 105991733	1			1	1			1	Case 2 \| 76	View
66	6034199	38749033, 38749109		1		1		1		1	Case 2 \| 76	View
67	6033627	66320007, 66320463		1		1	2	10	3	15	Case 2 \| 456	View
68	6034222	242151803, 242151878				0				0	Case 2 \| 75	View
69	6034214	152589964, 152590027				0				0	Case 2 \| 63	View
70	6033571	246764252, 246764362				0				0	Case 2 \| 110	View
71	6034207	103763116, 103763176				0				0	Case 2 \| 60	View
72	6033570	208638529, 208639102				0	6	5		11	Case 2 \| 573	View
73	6033935	237898619, 237898695				0		1		1	Case 2 \| 76	View

Contents
Description

VIS-Cistrome factor overlapping Description

The overlaps between integration site and cistrome are retrieved by genome search engine GIGGLE (Ryan M Layer et al. 2018). We built three indexs including histone modification, transcription factor binding site and chromatin accessibility, then we searched the significance of shared genomic loci (overlaps) between query VIS and Cistrome (Rongbin Zheng et al. 2019) genome interval files. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount could indicate that the virus integration site is a potentially functional DNA element.

HTLV1 Overall Heatmap

This heatmap is an overall statistics for HTLV1 VIS-Cistrome factor overlapped records by chromosome. The darker the red, the greater the overlapped records number. The user can view specific number by moving mouse pointer.

Browse data by Chromosome or Factor

The user can browse HTLV1 VIS-Cistrome factor overlapped records data by specific chromosome or statistics histogram for specific Cistrome factor when users click the chromosome or Cistrome factor the user are interested in.

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

This table showed the VIS locations with VIS-cistrome overlap information and VIS details for each chromosome, you can click green button with number which indicates the overlapped records of this VIS and 3 cistrome factor (histone modification, transcription factor binding site and chromatin accessibility) to inspect details of cistrome sample and factor information, you can click "Detail" button to inspect other information of this VIS.

Case 1
： The deletion of human fragments during the integration event.

Case 2
： Due to the experimental method/design, two viral insertion positions were provided in the literature.
Length:
~40 bp

41 bp~1000 bp

1001 bp~