HBV Target gene Detail Information

> CDH6 Gene Search Result


Gene Information
Gene Name CDH6
Gene ID 1004
Gene Full Name cadherin 6
Gene Alias CAD6|KCAD
Transcripts ENSG00000113361
Virus HBV
Gene Type protein-coding
HPA Location Info Plasma membrane, Cell Junctions;
Membrane Info Plasma proteins, Predicted membrane proteins
Uniport_ID P55285
HGNC ID HGNC:1765
OMIM ID 603007
Summary This gene encodes a member of the cadherin superfamily. Cadherins are membrane glycoproteins that mediate homophilic cell-cell adhesion and play critical roles in cell differentiation and morphogenesis. The encoded protein is a type II cadherin and may play a role in kidney development as well as endometrium and placenta formation. Decreased expression of this gene may be associated with tumor growth and metastasis. [provided by RefSeq, May 2011]
Target gene [CDH6] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005752 chr5 20 13 15 48 View
1014495 chr5 3 0 0 3 View
1020930 chr5 20 13 15 48 View
1020931 chr5 3 0 0 3 View
1043034 chr5 3 0 0 3 View
1043035 chr5 34 23 21 78 View

Target gene [CDH6] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - CDH6 peak across samples

Peak Plot

> Dataset: GSE68402 - CDH6 peak across samples

Peak Plot

> Dataset: GSE100400 - CDH6 peak across samples

Peak Plot

> Dataset: GSE131257 - CDH6 peak across samples

Peak Plot