HBV Target gene Detail Information

> CHL1 Gene Search Result


Gene Information
Gene Name CHL1
Gene ID 10752
Gene Full Name cell adhesion molecule L1 like
Gene Alias CALL|L1CAM2
Transcripts ENSG00000134121
Virus HBV
Gene Type protein-coding
HPA Location Info Secreted in brain;
Membrane Info Plasma proteins, Predicted membrane proteins, Predicted secreted proteins
Uniport_ID O00533
HGNC ID HGNC:1939
OMIM ID 607416
Summary The protein encoded by this gene is a member of the L1 gene family of neural cell adhesion molecules. It is a neural recognition molecule that may be involved in signal transduction pathways. The deletion of one copy of this gene may be responsible for mental defects in patients with 3p- syndrome. This protein may also play a role in the growth of certain cancers. Alternate splicing results in both coding and non-coding variants. [provided by RefSeq, Nov 2011]
Target gene [CHL1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005515 chr3 51 3 0 54 View
1010287 chr3 7 4 1 12 View
1011235 chr3 0 2 7 9 View
1014258 chr3 3 1 0 4 View
1014305 chr3 3 1 0 4 View

Target gene [CHL1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - CHL1 peak across samples

Peak Plot

> Dataset: GSE100400 - CHL1 peak across samples

Peak Plot

> Dataset: GSE131257 - CHL1 peak across samples

Peak Plot