HBV Target gene Detail Information

> CNTN6 Gene Search Result


Gene Information
Gene Name CNTN6
Gene ID 27255
Gene Full Name contactin 6
Gene Alias NB3
Transcripts ENSG00000134115
Virus HBV
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q9UQ52
HGNC ID HGNC:2176
OMIM ID 607220
Summary The protein encoded by this gene is a member of the immunoglobulin superfamily. It is a glycosylphosphatidylinositol (GPI)-anchored neuronal membrane protein that functions as a cell adhesion molecule. It may play a role in the formation of axon connections in the developing nervous system. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
Target gene [CNTN6] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006513 chr3 16 0 21 37 View
1014187 chr3 0 0 4 4 View
1015298 chr3 1 1 0 2 View
1016359 chr3 1 0 0 1 View
1019869 chr3 0 0 0 0 View
1019912 chr3 0 0 0 0 View
1019919 chr3 0 0 0 0 View
1021613 chr3 1 1 0 2 View
1021614 chr3 1 0 0 1 View
1042724 chr3 7 0 0 7 View
1042725 chr3 7 1 0 8 View

Target gene [CNTN6] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - CNTN6 peak across samples

Peak Plot

> Dataset: GSE68402 - CNTN6 peak across samples

Peak Plot

> Dataset: GSE100400 - CNTN6 peak across samples

Peak Plot

> Dataset: GSE131257 - CNTN6 peak across samples

Peak Plot