HBV Target gene Detail Information

> CNTNAP4 Gene Search Result


Gene Information
Gene Name CNTNAP4
Gene ID 85445
Gene Full Name contactin associated protein family member 4
Gene Alias CASPR4
Transcripts ENSG00000152910
Virus HBV
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q9C0A0
HGNC ID HGNC:18747
OMIM ID 610518
Summary This gene encodes a member of the neurexin protein family. Members of this family function in the vertebrate nervous system as cell adhesion molecules and receptors. This protein contains epidermal growth factor repeats and laminin G domains. In addition, it includes an F5/8 type C domain, discoidin/neuropilin- and fibrinogen-like domains, and thrombospondin N-terminal-like domains. This protein may also play a role in proper neurotransmission in the dopaminergic and GABAergic systems and mutations in this gene may be associated with certain psychiatric illnesses. A polymorphism in an intron of this gene may be associated with longevity. [provided by RefSeq, Apr 2016]
Target gene [CNTNAP4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1004463 chr16 40 26 14 80 View
1006269 chr16 3 37 0 40 View
1006270 chr16 4 36 0 40 View
1013399 chr16 0 5 0 5 View
1014086 chr16 2 0 2 4 View
1017944 chr16 0 0 0 0 View
1021132 chr16 0 0 0 0 View
1023564 chr16 4 36 0 40 View
1023565 chr16 3 37 0 40 View
1042209 chr16 5 40 0 45 View

Target gene [CNTNAP4] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - CNTNAP4 expression across samples

Volcano Plot

Bar Plot