HBV Target gene Detail Information

> CPS1-IT1 Gene Search Result


Gene Information
Gene Name CPS1-IT1
Gene ID 29034
Gene Full Name CPS1 intronic transcript 1
Gene Alias CPS1-IT|CPS1IT|CPS1IT1|PRO0132
Transcripts ENSG00000280837
Virus HBV
Gene Type ncRNA
HGNC ID HGNC:30102
lncRNASNP2 ID CPS1-IT1
Summary This gene does not encode a protein, and it is located within an intron of the gene encoding carbamoyl-phosphate synthetase 1. [provided by RefSeq, Jul 2008]
Target gene [CPS1-IT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1015801 chr2 2 0 0 2 View
1015802 chr2 2 0 0 2 View

Target gene [CPS1-IT1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - CPS1-IT1 peak across samples

Peak Plot

> Dataset: GSE131257 - CPS1-IT1 peak across samples

Peak Plot