HBV Target gene Detail Information

> LDC1P Gene Search Result


Gene Information
Gene Name LDC1P
Gene ID 149086
Gene Full Name leucine decarboxylase 1, pseudogene
Gene Alias LINC01225|SEELA1
Transcripts ENSG00000293391
Virus HBV
Gene Type pseudo
HGNC ID HGNC:49677
Target gene [LDC1P] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1024476 chr1 30 73 5 108 View

Target gene [LDC1P] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - LDC1P peak across samples

Peak Plot

> Dataset: GSE68402 - LDC1P peak across samples

Peak Plot