HPV Target gene Detail Information

> LINC00390 Gene Search Result


Gene Information
Gene Name LINC00390
Gene ID 105370183
Gene Full Name long intergenic non-protein coding RNA 390
Gene Alias -
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42718
Target gene [LINC00390] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011829 chr13 2 1 0 3 View
5012105 chr13 1 2 0 3 View

Target gene [LINC00390] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC00390 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00390 peak across samples

Peak Plot