HPV Target gene Detail Information

> LINC00972 Gene Search Result


Gene Information
Gene Name LINC00972
Gene ID 105375380
Gene Full Name long intergenic non-protein coding RNA 972
Gene Alias PLADE
Transcripts ENSG00000225128
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:48826
Target gene [LINC00972] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005415 chr7 1 0 0 1 View
5005812 chr7 10 1 14 25 View
5011478 chr7 7 3 0 10 View
5011753 chr7 2 0 0 2 View

Target gene [LINC00972] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC00972 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00972 peak across samples

Peak Plot